DN617641

Overview
NameDN617641
Unique NameDN617641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1717 contig Csv1_Contig1717:57..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.885e-27
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2
Query:  410 QEDFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            +E+F D +    +DHPIW I T GL QS+I+SI +  YK+  GLIE TDC VCL+EF+EDESLRLLPKC+HAFHISCIDTWL
Sbjct:  131 EEEFQDREQ---VDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWL 209          

HSP 2 Score: 24.6386 bits (52), Expect = 1.885e-27
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  660 SHTNCPLC 683
            SHTNCPLC
Sbjct:  211 SHTNCPLC 218          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  425 DEDHGPVLD----HPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            DED     D    H +W I T+GL +S I+SI V  +KK  G+I+GT+CSVCL+EF+EDESLRLLPKCSHAFH++CIDTWL
Sbjct:   87 DEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWL 167          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:  479 GLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLK 658
            GL +S+I SI V+KY+K  G +E +DCSVCLSEFQE+ESLRLLPKC+HAFH+ CIDTWLK
Sbjct:  133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 2
Query:  470 NTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLK 658
            N  GL +S+I SI V+KYK   G ++G+DCSVCLSEF+E+ESLRLLPKC+HAFH+ CIDTWLK
Sbjct:  113 NGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  416 DFFDEDHGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            +F D D        +++++  GL Q++ID++ VF YK+  G  E  DC+VCL EF ED+ LRLLP CSHAFHI CIDTWL
Sbjct:   97 EFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWL 176          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.751e-16
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  407 TQEDFFDED---HGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGL-IEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            ++ED+FD      G +    ++ ++  G+ QS+ID++ VF YK  VGL I   DC VCL EF+ ++ LRLLPKCSHAFH+ CIDTWL
Sbjct:   74 SREDYFDNVTALQGQL--QQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL 158          

HSP 2 Score: 20.7866 bits (42), Expect = 1.751e-16
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3
Query:  660 SHTNCPLC 683
            SH+ CPLC
Sbjct:  160 SHSTCPLC 167          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  470 NTIGLPQSVIDSIAVFKYKKDVG--LIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLK 658
            +T GL  ++I  I  FK KK      I GTDCS+CL EF EDESLRLLPKC+H FH+ CID WLK
Sbjct:  150 STAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLK 214          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.094e-15
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  410 QEDFFDED---HGPVLDHPIWYINTIGLPQSVIDSIAVFKYKKDVGLIEGT-DCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            +ED+FD      G +    +++++  G+ QS ID++ VF YK  +GL     DC+VCL EF+ ++ LRLLPKCSHAFH+ CIDTWL
Sbjct:   83 REDYFDNVTALQGQL--QQLFHLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL 166          

HSP 2 Score: 20.7866 bits (42), Expect = 1.094e-15
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = 3
Query:  660 SHTNCPLC 683
            SH+ CPLC
Sbjct:  168 SHSTCPLC 175          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  458 IWYINTIGLPQSVIDSIAVFKYKKDVGLIEGT----------DCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWLK 658
            ++++N  GL Q+ ID++ VF YK+ VG   G           DC+VCL EF E + LRLLP CSHAFH++CIDTWL+
Sbjct:  100 LFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQ 176          
BLAST of DN617641 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  440 PVLDHPIWYINTIGLPQSVIDSIAVFKYKK-DVGLIEGTDCSVCLSEFQEDESLRLLPKCSHAFHISCIDTWL 655
            P L H +++++  GL Q+ ID++ VF Y    + L +  DC+VCL+EF + + LRLLP CSHAFH+ CIDTWL
Sbjct:  168 PQLQH-LFFLHDSGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL 239          
The following BLAST results are available for this feature:
BLAST of DN617641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ATL1O_ARATH1.885e-2765.85RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL5F_ARATH5.357e-2361.73RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL3A_ARATH3.250e-2071.67RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL5G_ARATH4.245e-2068.25Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL1D_ARATH5.737e-1751.25RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL2C_ARATH1.751e-1649.43Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL4H_ARATH1.082e-1560.00Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL4K_ARATH1.094e-1547.67RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL5I_ARATH9.159e-1549.35RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL3I_ARATH7.754e-1449.32RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617641 ID=DN617641; Name=DN617641; organism=Citrus sinensis; type=EST; length=684bp
ATTTCTCCCTTCTGCTTGATCATTATCAGATTCTTCCTCCTCTGCTTTTG
TGATGGGGTTTAAATTTGATCATAGAAAACCGCTACTAAAATTCGATTAC
AATAATAGCTCAACCCCGCTTAGTCCAGGAAAAAATGATTCTAGTTCTGG
TTTGTCTTCATCATCATGCTTGATTGGCTGCCGAAAGTGTAAGTGCCAAG
GCGATTTCGATTTTCCTCCTCCCTTGCCTCTAGCACCGCCGGCTGGTGAT
GGATCACATGCAAAGCAATTAGTTACTACGGGTATGATTGTCATGTCTTG
CATCATTGCTGGTACGCTTCTTTTTGGCATTTTGTGTGCAGCTGTAAGAG
TTTATCGTTCAAGGAGAAATAATTCAAGAAGAACTAATCCGCCAATAATT
TTTGCTACGCAAGAGGATTTTTTTGATGAAGATCATGGACCTGTTTTGGA
TCATCCCATATGGTACATCAATACTATTGGTCTTCCACAATCTGTGATTG
ATTCTATTGCAGTGTTTAAGTACAAAAAAGATGTGGGTTTGATTGAAGGA
ACAGATTGCTCTGTTTGCTTGAGTGAGTTTCAGGAAGATGAGAGCCTTAG
GCTATTGCCCAAGTGTAGCCATGCCTTTCACATTTCTTGTATTGACACTT
GGTTAAAGGTCGCATACAAATTGCCCTTTGTGTC
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