DN617639

Overview
NameDN617639
Unique NameDN617639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617639_ssr63 microsatellite DN617639_ssr63:63..72. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617639_ssr9 microsatellite DN617639_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11357 contig Csv1_Contig11357:99..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617639 vs. ExPASy Swiss-Prot
Match: P2C68_ARATH (Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana GN=At5g06750 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  452 MLSWLARITMACWRSVRRYARMNKDNFNYNXXXXXXXXXXXXXXLLWCKDLEKHSYGDFSFAVVQANEVIEDHSQV 679
            M SWLAR+ + C R +RRY RMN+D+ + +              LLW ++LE+HS+GDFS AVVQANEVIEDHSQV
Sbjct:    1 MFSWLARMALFCLRPMRRYGRMNRDDDDDDDHDGDSSSSGDS--LLWSRELERHSFGDFSIAVVQANEVIEDHSQV 74
[Close]
BLAST of DN617639 vs. ExPASy Swiss-Prot
Match: P2C43_ORYSJ (Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584366 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  452 MLSWLARITMACWRSVRRYARMNKDNFNYNXXXXXXXXXXXXXXLLWCKDLEKHSYGDFSFAVVQANEVIEDHSQV 679
            M  WL RI  ACW  VRRYA   +D  + +              LLW +DL +H+ G+FSFAVVQAN+V+EDHSQV
Sbjct:    1 MWPWLERIASACWDRVRRYALTRRDEEDGSGSGGDADDL-----LLWSRDLVRHAAGEFSFAVVQANDVLEDHSQV 71
[Close]
BLAST of DN617639 vs. ExPASy Swiss-Prot
Match: P2C25_ORYSJ (Probable protein phosphatase 2C 25 OS=Oryza sativa subsp. japonica GN=Os02g0685600 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:  452 MLSWLARITMACWRSVRRYARMNKDNFNYNXXXXXXXXXXXXXXLLWCKDLEKHSYGDFSFAVVQANEVIEDHSQV 679
            M SWL RI  AC    RRYAR  KD                   LLW +DL +H+ G+FSFAVVQANE +EDHSQV
Sbjct:    1 MFSWLLRIASACLGPARRYARTRKDE------DGGDNGGGVADGLLWSRDLGRHAAGEFSFAVVQANEALEDHSQV 70
The following BLAST results are available for this feature:
BLAST of DN617639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
P2C68_ARATH3.120e-1553.95Probable protein phosphatase 2C 68 OS=Arabidopsis ... [more]
P2C43_ORYSJ4.217e-1248.68Probable protein phosphatase 2C 43 OS=Oryza sativa... [more]
P2C25_ORYSJ5.508e-1250.00Probable protein phosphatase 2C 25 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01H19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617639 ID=DN617639; Name=DN617639; organism=Citrus sinensis; type=EST; length=679bp
CTTTCTTTCAACCAACCAACAAAAAAAAAGAAATTGAAGTCTTCAAGTTT
CACACCAACACACTCTCTCTCTCCACTTTGATCCATTAATTTCTTCCCAC
CTTTTTCCTTTTTCCCCTTCTTTTTTCTTGAATCAGAATCTTGAACTCAA
CAATTAAAAGAAAAAGAAAGAATAAAAACTTTGATCCAACTCTTTCATTC
TTTCAATCAATTTCTCTCTGTACTGCTTGCTACTTCACTTTGATCGGGTC
ACTCACTTCCTTTCATTCACCTTCATATAAAAAATTCAATCTTTCTGCTT
CCTCTGCTCTAAATTTGTGATCTTTATTTTGCTTTCTCACTAAATTTTGA
ATTTTTTTTTTGTTCTTTTAACTTGAAAATAAAAACCAATTTGAGAAATT
CAAGAATTAGTGGTTTGAATCAAAAGGGTATTGCTGTAAGGGAAATGAGG
GATGCTTTCTTGGTTGGCAAGGATAACAATGGCTTGTTGGAGATCAGTGA
GGCGATATGCGCGTATGAACAAGGATAATTTCAATTACAATGACATTGAT
ATTAGTGATTCTGATTCTTCACATCAAGACTCACTTCTTTGGTGCAAAGA
CCTTGAGAAGCACTCTTATGGTGACTTCTCCTTTGCTGTTGTTCAAGCCA
ATGAAGTTATTGAGGATCACAGCCAAGTT
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