DN617638

Overview
NameDN617638
Unique NameDN617638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5853 contig Csv1_Contig5853:15..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617638 vs. ExPASy Swiss-Prot
Match: P2C25_ORYSJ (Probable protein phosphatase 2C 25 OS=Oryza sativa subsp. japonica GN=Os02g0685600 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = -2
Query:  359 EAVDIVYNCPRAGVXXXXXXXXXXXXXXXRQMGYDELKKIDKGDRRFYHDDITVVVIFIDHALLGNK-ISVPELSVRGFVDTVGPSNFN 622
            +AVDIVY  PRAG+               R+M + +LKK++KG RRF+HDDITVVV++IDH LL  K +SVPELSVRGFVD+VGPS  +
Sbjct:  293 QAVDIVYKNPRAGIAKRLVNTALKEAARKREMRFVDLKKVEKGVRRFFHDDITVVVVYIDHELLQEKNVSVPELSVRGFVDSVGPSRIS 381          
BLAST of DN617638 vs. ExPASy Swiss-Prot
Match: P2C43_ORYSJ (Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584366 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = -2
Query:  359 EAVDIVYNCPRAGVXXXXXXXXXXXXXXXRQMGYDELKKIDKGDRRFYHDDITVVVIFIDHALL-GNKISVPELSVRGFVDTVGPSNFN 622
            +AV+IV+N PR G+               R+M Y+++KK++KG RRF+HDDITVVV+FIDH LL     S PE+SVRGFVD+ GPS+F+
Sbjct:  294 QAVEIVHNNPREGIARRLVKAALKEAARKREMKYNDIKKLEKGVRRFFHDDITVVVVFIDHELLQDGDESTPEISVRGFVDSGGPSSFS 382          
BLAST of DN617638 vs. ExPASy Swiss-Prot
Match: P2C68_ARATH (Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana GN=At5g06750 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  356 EAVDIVYNCPRAGVXXXXXXXXXXXXXXXRQMGYDELKKIDKGDRRFYHDDITVVVIFIDHALL-GNKISVPELSVRGFVDTVGPSNFNI 622
            +AV+IV   PR G+               R+M YD+LKK+++G RRF+HDDITVVVIFID+ LL   K +VPELS++GF  TVGPS F+I
Sbjct:  301 QAVEIVNKHPRPGIARRLVRRAITIAAKKREMNYDDLKKVERGVRRFFHDDITVVVIFIDNELLMVEKATVPELSIKGFSHTVGPSKFSI 390          
BLAST of DN617638 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = -2
Query:  368 EAVDIVYNCPRAGVXXXXXXXXXXXXXXXRQMGYDELKKIDKGDRRFYHDDITVVVIFIDHALLGNKIS-VPELSVRGFVDTVGPS 622
            EAVDIV  CPR G+               R+M Y +LKKID+G RR +HDDITV+V+F+D  L+    S  P LS+ G  D  GPS
Sbjct:  299 EAVDIVNTCPRNGIARKLIKTALREAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSRRPLLSISGGGDLAGPS 384          
The following BLAST results are available for this feature:
BLAST of DN617638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
P2C25_ORYSJ1.350e-1956.18Probable protein phosphatase 2C 25 OS=Oryza sativa... [more]
P2C43_ORYSJ1.263e-1751.69Probable protein phosphatase 2C 43 OS=Oryza sativa... [more]
P2C68_ARATH2.815e-1752.22Probable protein phosphatase 2C 68 OS=Arabidopsis ... [more]
P2C38_ARATH2.726e-1246.51Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01H19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617638 ID=DN617638; Name=DN617638; organism=Citrus sinensis; type=EST; length=623bp
CAAGTACAATATTATTATTGACATACAGTGAATAAAATACACGACTTTTG
AGTGCACGTAGGCCTCACATGTGGAACTGCACAAAAGAGGTAAATCTTTA
ACCTCTTTGTATGCATTATCACCAAAGGGCATATCAAAATAATTAAGCAA
TCGAGGGACAATAGTTTTTGGGTTAAAGATGGCTGGGTAGGAGGAGATTA
GGAAAAAGAGAAACCGATAGAAACAACAATCAAGTGCTGCAAAAACATCG
TAGAAGTAGAAACTTCTTGAAGCCAATCTTCACGACCCAACTGACCATTT
CAGGTGAACGGGCGGTATTTCAGATACTGGCTCAAGTTATGCATCAATTT
TGTAGAATGTTAAAGTTTGACGGTCCAACAGTATCGACAAACCCTCGAAC
AGATAGCTCTGGTACAGAGATCTTGTTCCCCAGCAACGCATGGTCTATAA
AGATGACAACCACAGTAATATCATCATGATAAAACCGCCTATCCCCCTTA
TCAATCTTCTTAAGCTCATCATAACCCATCTGCCTTTTCTTAGCTGCCGC
ATTTAAAGCTGTTTTAAGAAGCCGTCTGGCAACTCCAGCTCGTGGGCAAT
TATAAACAATATCAACTGCCTCT
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