DN617620

Overview
NameDN617620
Unique NameDN617620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:266..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 4.845e-57
Identity = 110/122 (90.16%), Postives = 117/122 (95.90%), Query Frame = -1
Query:  263 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 628
            T AAIRTA+SHV NLITGVTKGYRYKMRFVYAHFPINASI N+N AIEIRNFLGEKKVRKVDML+GVT++RS+KVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+K TI
Sbjct:   65 TMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 4.102e-56
Identity = 107/126 (84.92%), Postives = 119/126 (94.44%), Query Frame = -1
Query:  251 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 628
            TSA+IRTALSHV NLI+GVT+G+RYKMRFVYAHFPINASIG + K+IEIRNFLGEKKVRKV+MLDGVT++RS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKS I+ EE
Sbjct:   69 TSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.193e-55
Identity = 108/126 (85.71%), Postives = 118/126 (93.65%), Query Frame = -1
Query:  251 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 628
            TSAAIRTALSHV NLITGVTKG+RYKMRFVYA FPINASI N+NK+IEIRNFLGEKKVRKVD+LDGV++IRS+KVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  ++ EE
Sbjct:   68 TSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.245e-53
Identity = 102/126 (80.95%), Postives = 114/126 (90.48%), Query Frame = -1
Query:  251 TSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 628
            TSA+IRTALSHV NLI GVT+G+ Y+MRFVYAHFPINASI  NNK+IEIRNFLGEKKVRKV+MLDGV ++RS+KVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  I  EE
Sbjct:   69 TSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.489e-39
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = -1
Query:  260 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 622
            AA+RT  SH+ N+I GVT G++YKMR VYAHFPIN     NN  IEIRNFLGEK +R+V+M  GVTV+ S   KDEL+++GNDIE VS SAALI Q   VKNKDIRKFLDG+YVSEK+T++
Sbjct:   66 AAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.772e-39
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = -1
Query:  251 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 622
            AA+RT  SHV N+I GVTKG++YKMR VYAHFPIN      N  IEIRNFLGEK +R+V M  GVTV+ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVSEK+T+  +E
Sbjct:   66 AAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVEVDE 189          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.466e-37
Identity = 81/120 (67.50%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A IRT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   68 ATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 80/120 (66.67%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 80/120 (66.67%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of DN617620 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.914e-37
Identity = 80/120 (66.67%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  263 AAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 622
            A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:   68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
The following BLAST results are available for this feature:
BLAST of DN617620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL9_ORYSJ4.845e-5790.1660S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL91_ARATH4.102e-5684.9260S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_PEA1.193e-5585.7160S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL92_ARATH4.245e-5380.9560S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_DROME3.489e-3965.2960S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_SPOFR7.772e-3964.5260S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_MACFA1.466e-3767.5060S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_RAT1.914e-3766.6760S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_MOUSE1.914e-3766.6760S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_HUMAN1.914e-3766.6760S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617620 ID=DN617620; Name=DN617620; organism=Citrus sinensis; type=EST; length=628bp
TTTTGATTAGAAGATTAGTTCAAGAGGTAGATAAAAGATCAAAAATGCCA
GATGCATAGCTATAAAATCCATACATATATTGTGATGATAGCAATTGAAG
ACATAAAATTGAAATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACC
AAAAGCATGTCCTCAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAA
AAAAAATTCATAACATTACTATGACAAGAAAATTCGAAAGCTAATCATCA
TTCTTCTCCAAGTATGGTGCTTTTCTCACTGACATAGATCCCATCAAGAA
ATTTCCTAATGTCCTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCA
GCAGAGCGAGACACGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATC
CTTAACCTTATCGGACCTAATGACGGTAACACCATCAAGCATATCCACTT
TTCGAACCTTTTTCTCTCCAAGAAAGTTACGGATCTCAATGGCCTTGTTA
TTGTTACCGATGGAGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCAT
CTTGTAGCGATAGCCCTTGGTAACACCAGTGATGAGATTGCCGACATGGC
TGAGGGCAGTTCTGATGGCGGCGCTGGT
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