DN617615

Overview
NameDN617615
Unique NameDN617615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RECAM (Cytochrome c oxidase assembly protein ctaG OS=Reclinomonas americana GN=CTAG PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.381e-46
Identity = 81/150 (54.00%), Postives = 104/150 (69.33%), Query Frame = -2
Query:  192 KSRKMLLYLTALV-FAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 638
            K+RK +  L A V   M+G +Y +VPLYR FCQ TG+GGT Q  +   + +    KD     R + V+FN DV+D MPWKF P Q+E++V  GE+ALAFY+AEN + + I G+STYNV P +A +YFNKIQCFCFEEQRL P E IDMP+
Sbjct:    3 KNRKSIAILIAAVSITMIGFSYGSVPLYRIFCQVTGFGGTTQVADLESDILTL--KDEQQENRIITVRFNGDVSDTMPWKFHPIQQEIKVMVGETALAFYSAENPTDSSIIGISTYNVNPQQAGIYFNKIQCFCFEEQRLKPHETIDMPV 150          

HSP 2 Score: 41.2022 bits (95), Expect = 8.381e-46
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            VFF+IDP    DP+M  I+++ LSYTFF V +
Sbjct:  150 VFFFIDPAILDDPKMSDIDSITLSYTFFNVED 181          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COX11_MOUSE (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Mus musculus GN=Cox11 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.393e-44
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = -2
Query:  192 QKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 641
            ++++ +L Y+ A    M+G++YAAVPLYR +CQ TG GG+          +A HS D       V  R + V FNADV   + W F P Q E+ V PGE+ALAFY A+N +  P+ G+STYNV P +A  YFNKIQCFCFEEQRL P E++DMP+
Sbjct:   89 RRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA---------VAGHSSDQIENMVPVKDRVIKVTFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPV 234          

HSP 2 Score: 46.595 bits (109), Expect = 3.393e-44
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            VFFYIDPEF  DPRM  ++ + LSYTFF+  E
Sbjct:  234 VFFYIDPEFAEDPRMVNVDLITLSYTFFEAKE 265          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COX11_BOVIN (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Bos taurus GN=COX11 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 9.781e-44
Identity = 74/155 (47.74%), Postives = 100/155 (64.52%), Query Frame = -2
Query:  192 QKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 641
            ++++ +L Y+ A    M+G++YAAVPLYR +CQ TG GG+          +A H+ D       V  R + + FNADV   + W F P Q E+ V PGE+ALAFY A+N +  P+ G+STYNV P +A  YFNKIQCFCFEEQRL P E++DMP+
Sbjct:   85 RRNKTVLTYMAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA---------VAGHASDQIENMVPVKDRIIKITFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPV 230          

HSP 2 Score: 46.595 bits (109), Expect = 9.781e-44
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            VFFYIDPEF  DPRM  ++ + LSYTFF+  E
Sbjct:  230 VFFYIDPEFAEDPRMVNVDLITLSYTFFEAKE 261          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COX11_HUMAN (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Homo sapiens GN=COX11 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.662e-43
Identity = 74/162 (45.68%), Postives = 101/162 (62.35%), Query Frame = -2
Query:  192 ASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 662
            A      ++++  L Y+ A+   M+G++YAAVPLYR +CQ TG GG+          +A H+ D       V  R + + FNADV   + W F P Q E+ V PGE+ALAFY A+N +  P+ G+STYN+ P +A  YFNKIQCFCFEEQRL P E++DMP+
Sbjct:   83 AQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSA---------VAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPV 235          

HSP 2 Score: 45.8246 bits (107), Expect = 1.662e-43
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            VFFYIDPEF  DPRM  ++ + LSYTFF+  E
Sbjct:  235 VFFYIDPEFAEDPRMIKVDLITLSYTFFEAKE 266          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: CO112_SCHPO (Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe GN=cos1102 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.779e-42
Identity = 76/150 (50.67%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  192 RKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTV---QRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 632
            R  + YL A+    +G TYAAVPLYR FC  TGYGGT+   Q +   E  + R  KD     + + V FN DVA  + WK  P QRE+ V PGE+AL FYTAEN S   I GV+TYN+ P +AAVYF+K+ CFCFEEQ+L   E++D+P+
Sbjct:  568 RTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGGTLNTDQSRMNAERMVPR--KDN----KRIRVTFNGDVAGNLSWKLWPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDAHEKVDLPV 711          

HSP 2 Score: 46.2098 bits (108), Expect = 1.779e-42
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = -3
Query:   80 VFFYIDPEFETDPRMDGINNLILSYTFFKVNED 178
            VFF+IDPEF  DP M  I++++LSYTFF+   D
Sbjct:  711 VFFFIDPEFADDPNMKDIDDILLSYTFFEARYD 743          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: CO111_SCHPO (Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe GN=cox1101 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.779e-42
Identity = 76/150 (50.67%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  192 RKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTV---QRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 632
            R  + YL A+    +G TYAAVPLYR FC  TGYGGT+   Q +   E  + R  KD     + + V FN DVA  + WK  P QRE+ V PGE+AL FYTAEN S   I GV+TYN+ P +AAVYF+K+ CFCFEEQ+L   E++D+P+
Sbjct:  568 RTTIYYLVAISIFALGLTYAAVPLYRLFCSKTGYGGTLNTDQSRMNAERMVPR--KDN----KRIRVTFNGDVAGNLSWKLWPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDAHEKVDLPV 711          

HSP 2 Score: 46.2098 bits (108), Expect = 1.779e-42
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = -3
Query:   80 VFFYIDPEFETDPRMDGINNLILSYTFFKVNED 178
            VFF+IDPEF  DP M  I++++LSYTFF+   D
Sbjct:  711 VFFFIDPEFADDPNMKDIDDILLSYTFFEARYD 743          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COX11_PONAB (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Pongo abelii GN=COX11 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.189e-42
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = -2
Query:  192 QKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKI-QCFCFEEQRLLPGEQIDMPL 641
            ++++  L Y+ A+   M+G++YAAVPLYR +CQ TG GG+          +A H+ D       V  R + + FNADV   + W F P Q E+ V PGE+ALAFY A+N +  P+ G+STYN+ P +A  YFNKI QCFCFEEQRL P E++DMP+
Sbjct:   90 RRNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSA---------VAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQQCFCFEEQRLNPQEEVDMPV 236          

HSP 2 Score: 45.8246 bits (107), Expect = 5.189e-42
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            VFFYIDPEF  DPRM  ++ + LSYTFF+  E
Sbjct:  236 VFFYIDPEFAEDPRMIKVDLITLSYTFFEAKE 267          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COX11_YEAST (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Saccharomyces cerevisiae GN=COX11 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 4.307e-41
Identity = 73/152 (48.03%), Postives = 100/152 (65.79%), Query Frame = -2
Query:  192 KSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGG---TVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 638
            K R +  Y +++    +G  YAAVPLYR  C  TG+GG   T +RK T ++ I         T + + + F ++V+  +PWKF+P QREV V PGE+ALAFY A+N S   I G++TY++ P +AA YFNKIQCFCFEEQ+L  GE+IDMP+
Sbjct:   81 KDRTVAFYFSSVAVLFLGLAYAAVPLYRAICARTGFGGIPITDRRKFTDDKLIP------VDTEKRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNYSDKDIIGMATYSIAPGEAAQYFNKIQCFCFEEQKLAAGEEIDMPV 226          

HSP 2 Score: 43.5134 bits (101), Expect = 4.307e-41
Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = -3
Query:   86 VFFYIDPEFETDPRMDGINNLILSYTFFKVN 178
            VFF+IDP+F +DP M  I+++IL YTFF+ +
Sbjct:  226 VFFFIDPDFASDPAMRNIDDIILHYTFFRAH 256          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COX11_DICDI (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Dictyostelium discoideum GN=cox11 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.609e-41
Identity = 74/152 (48.68%), Postives = 101/152 (66.45%), Query Frame = -2
Query:  189 EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPLL 644
            ++K++ + LY+   +  ++G +YAAVPLYR FC+ATGYGGT +  +  +  I + + D TV    + V F+A  A+ +PW F PTQ  +   PGE  L FY A N + TPI GV+TYN+TPMKA  YF KIQCFCF+EQR+   E IDMP+L
Sbjct:  127 QEKNKAIGLYVLIAIIGILGLSYAAVPLYRIFCRATGYGGTTRDADDFDV-IRKRNLDRTVYP--IKVTFSASTANKIPWTFKPTQSTIECLPGEPVLCFYRATNNTDTPIIGVATYNITPMKAGTYFTKIQCFCFDEQRINAHETIDMPVL 275          

HSP 2 Score: 38.1206 bits (87), Expect = 5.609e-41
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V F I+PE   D  M G++++ LSYTFFK N+
Sbjct:  274 VLFVIEPELLDDKNMKGVSDITLSYTFFKSND 305          
BLAST of DN617615 vs. ExPASy Swiss-Prot
Match: COXZ_RICBR (Cytochrome c oxidase assembly protein ctaG OS=Rickettsia bellii (strain RML369-C) GN=ctaG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.126e-38
Identity = 72/151 (47.68%), Postives = 98/151 (64.90%), Query Frame = -2
Query:  192 QKSRKMLLY-LTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPL 641
            +KS K L + L  L+ +MV  ++AAVPLY  FC+ TGYGGT  R     E ++ +SK     TR ++++F+A+V   +PW+FIP Q+ V++ PG++ L FY  EN S   I G S YNVTP KA  YF KI CFCFEEQ L  GE++ MP+
Sbjct:    3 KKSNKSLAFSLLGLIVSMVLLSFAAVPLYNLFCKVTGYGGTTNR-----ETVSIYSK--VKGTRPIIIEFDANVDKNLPWRFIPRQQRVQIVPGQNTLVFYETENLSDNDIIGTSIYNVTPNKAGKYFVKIHCFCFEEQLLKAGEKVLMPV 146          

HSP 2 Score: 40.817 bits (94), Expect = 1.126e-38
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = -3
Query:   83 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 178
            V FYID +FE DP M  +  L LSY+FFKV +
Sbjct:  146 VTFYIDKDFENDPEMRDVKVLTLSYSFFKVRD 177          
The following BLAST results are available for this feature:
BLAST of DN617615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
COXZ_RECAM8.381e-4654.00Cytochrome c oxidase assembly protein ctaG OS=Recl... [more]
COX11_MOUSE3.393e-4449.03Cytochrome c oxidase assembly protein COX11, mitoc... [more]
COX11_BOVIN9.781e-4447.74Cytochrome c oxidase assembly protein COX11, mitoc... [more]
COX11_HUMAN1.662e-4345.68Cytochrome c oxidase assembly protein COX11, mitoc... [more]
CO112_SCHPO1.779e-4250.67Rsm22-cox11 tandem protein 2, mitochondrial OS=Sch... [more]
CO111_SCHPO1.779e-4250.67Rsm22-cox11 tandem protein 1, mitochondrial OS=Sch... [more]
COX11_PONAB5.189e-4246.79Cytochrome c oxidase assembly protein COX11, mitoc... [more]
COX11_YEAST4.307e-4148.03Cytochrome c oxidase assembly protein COX11, mitoc... [more]
COX11_DICDI5.609e-4148.68Cytochrome c oxidase assembly protein COX11, mitoc... [more]
COXZ_RICBR1.126e-3847.68Cytochrome c oxidase assembly protein ctaG OS=Rick... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01H07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617615 ID=DN617615; Name=DN617615; organism=Citrus sinensis; type=EST; length=669bp
GATTATGTCAAAAAATAACTTCCAGTTGCTGATAATGATGTCATTTCTCC
AAAGTAATTGCATTCTAGAAACTTCCCTAATCCTCATTAACCTTGAAAAA
TGTATAGGACAAGATCAAGTTGTTGATACCATCCATTCTGGGATCTGTTT
CAAACTCAGGGTCAATGTAAAAGAATACCTGCCCGTGTGAGAAGAGGCAT
GTCAATCTGCTCTCCGGGGAGAAGACGCTGCTCCTCAAAGCAAAAGCATT
GTATTTTATTGAAGTAGACAGCAGCCTTCATAGGGGTGACATTATAAGTA
GAGACACCAGTTATTGGAGTCGAACTTCGATTCTCAGCAGTGTAAAATGC
AAGTGCGCTTTCTCCAGGCTTTACCCTTACCTCTCTTTGTGTTGGAATAA
ACTTCCATGGCATTCCATCAGCTACATCAGCGTTGAATTGCACAACAACT
TCCCTTGTAGTGACAGTTCCATCTTTGGAATGCCGAGCAATCTTTTCTTC
AACAGTCTCTTTTCGTTGAACAGTACCACCATAGCCAGTAGCCTGGCAGA
ATCTCCTATACAAAGGTACGGCGGCATAAGTACTTCCAACCATTGCAAAA
ACCAATGCTGTGAGGTATAAAAGCATCTTTCTTGATTTCTGCTCTGTTGA
AGCATGAGAAGCATAATGA
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