DN617614

Overview
NameDN617614
Unique NameDN617614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617614 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 9.176e-85
Identity = 141/159 (88.68%), Postives = 152/159 (95.60%), Query Frame = -2
Query:  141 LGAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 617
            L AHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVF CFGQYFCLHFEA+QLG APVYMAFLRFMGDE +AR+Y+YSLEVGG+GRK +WEGTPRS+RD HRKVRDSHDGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQQNPD+GVCI ++CS
Sbjct:  150 LVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 308          

HSP 2 Score: 26.1794 bits (56), Expect = 9.176e-85
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = -3
Query:  611 AGSDCSVVGDIPYLV 655
            AGS+C+ VGDI +LV
Sbjct:  137 AGSECAAVGDITFLV 151          
BLAST of DN617614 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.036e-84
Identity = 143/161 (88.82%), Postives = 148/161 (91.93%), Query Frame = -2
Query:  147 PILGAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ--NPDAGVCIPNL 623
            P L AHLRDDHKVDMH+GCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEA+QLG APVYMAFLRFMGDETEAR+Y+YSLEVGG GRKL WEGTPRS+RD HRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ      G CIPNL
Sbjct:  165 PFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQSGEGGGACIPNL 325          

HSP 2 Score: 30.4166 bits (67), Expect = 2.036e-84
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = -3
Query:  611 AGSDCSVVGDIPYLV 655
            AGS+CSV GDIP+LV
Sbjct:  154 AGSECSVTGDIPFLV 168          
BLAST of DN617614 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 4.518e-84
Identity = 141/161 (87.58%), Postives = 150/161 (93.17%), Query Frame = -2
Query:  141 PILGAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 623
            P L AHLRDDHKVDMH G TFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEA+QLG  PVYMAFLRFMGDE +ARSYSYSLEVGG+GRKL+WEGTPRSIRD HRKVRDS+DGLIIQRNMALFFSGGDRKELKLRVTG+IWKEQ +PD+G+ IPNL S
Sbjct:  166 PFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQHSPDSGLSIPNLSS 326          

HSP 2 Score: 30.0314 bits (66), Expect = 4.518e-84
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -3
Query:  611 AGSDCSVVGDIPYLV 655
            AGS+C +VGDIP+LV
Sbjct:  155 AGSECGIVGDIPFLV 169          
BLAST of DN617614 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.000e-71
Identity = 120/147 (81.63%), Postives = 133/147 (90.48%), Query Frame = -2
Query:  183 PILGAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 623
            P L  HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEA+QLG APVYMAFLRFMGDE EA+ +SYSLEVG +GRKL+W+G PRSIRD HRKVRDS DGLII RN+AL+FSGGDR+ELKLRVTGRIWKE+
Sbjct:  162 PTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308          

HSP 2 Score: 28.4906 bits (62), Expect = 1.000e-71
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3
Query:  611 AGSDCSVVGDIPYLV 655
            AGS+CSV GDIP LV
Sbjct:  151 AGSECSVTGDIPTLV 165          
BLAST of DN617614 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.133e-70
Identity = 117/147 (79.59%), Postives = 131/147 (89.12%), Query Frame = -2
Query:  183 PILGAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 623
            P L  HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEA+QLG APVYMAFLRFMGDE EA+ +SYSLEVG + RKL+W+G PRSIRD HRKVRDS DGLII RN+AL+FSG D++ELKLRVTGRIWKE+
Sbjct:  159 PTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305          

HSP 2 Score: 28.4906 bits (62), Expect = 9.133e-70
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -3
Query:  611 AGSDCSVVGDIPYLV 655
            AGS+CSV GDIP LV
Sbjct:  148 AGSECSVTGDIPTLV 162          
The following BLAST results are available for this feature:
BLAST of DN617614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SINA5_ARATH9.176e-8588.68E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA3_ARATH2.036e-8488.82E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA4_ARATH4.518e-8487.58E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA2_ARATH1.000e-7181.63E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA1_ARATH9.133e-7079.59Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01H05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617614 ID=DN617614; Name=DN617614; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTGAAGATGAAAAAGCCATTCTCAGTTCCGTTACAACGGACCAGA
AAACTTGACACAGCTTCAACACACCAGAAAAATGTTCCAAACAAATCACA
AATAAAAAAAAAAGAACTTGAATACAAAAATCACCTCTCAGCTACATAGG
TTTGGTATGCACACGCCAGCATCTGGATTCTGTTGTTCCTTCCATATCCT
CCCAGTAACTCTTAGCTTCAGCTCCTTCCTGTCCCCACCAGAGAAGAAAA
GCGCCATGTTTCGTTGGATGATAAGACCATCGTGGCTATCTCTGACCTTC
CGGTGGCAATCCCGGATGCTTCGGGGTGTTCCCTCCCAACTGAGCTTCCT
ACCATTTCCCCCAACCTCTAGGCTATAGCTATAGCTTCGAGCTTCAGTCT
CATCACCCATAAAACGGAGGAATGCCATGTAAACAGGAGCTGTCCCAAGC
TGGTATGCTTCGAAATGAAGGCAGAAGTATTGACCAAAACAATGGAAAAC
TGTAAGCATCCATGTAGCATTCTCTACTTCACGGGGATTGGACTTCACAT
AGCGATGATTGAATGTGCATCCTGTGTGCATATCTACTTTGTGATCGTCC
CTCAAATGGGCACCAAGTATGGGATGTCCCCAACGACAGAGCAATCTGAC
CCAGCAT
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