DN617594

Overview
NameDN617594
Unique NameDN617594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617594 vs. ExPASy Swiss-Prot
Match: CHCH2_MOUSE (Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial OS=Mus musculus GN=Chchd2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2 
Query:  329 HTVGHAVTGMFSGSGDHEVXXXXXXXXXXXTQGYQDQQSQASSPCAWELGQFLKCAQQQDDLSLCSGFNEALRQCKEMN 565
            HT+GHA+TG FSG G  E             QG Q Q  Q+  PC+ E+ QFL+CAQ Q D+ LC GFNE LRQC+  N
Sbjct:   74 HTLGHAITGGFSGGGSAE--PAKPDITYQEPQGAQLQNQQSFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIAN 150
[Close]
BLAST of DN617594 vs. ExPASy Swiss-Prot
Match: CHCH2_HUMAN (Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial OS=Homo sapiens GN=CHCHD2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 2 
Query:  329 HTVGHAVTGMFSGSGDHEVXXXXXXXXXXXTQGYQDQQSQASSPCAWELGQFLKCAQQQDDLSLCSGFNEALRQCKEMNRMA 574
            HT+GHA+TG FSG  + E             QG Q  Q Q   PC +E+ QFL+CAQ Q D+ LC GFNE L+QC+  N +A
Sbjct:   74 HTLGHAITGGFSGGSNAE--PARPDITYQEPQGTQPAQQQ--QPCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
The following BLAST results are available for this feature:
BLAST of DN617594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CHCH2_MOUSE4.196e-1449.37Coiled-coil-helix-coiled-coil-helix domain-contain... [more]
CHCH2_HUMAN1.033e-1246.34Coiled-coil-helix-coiled-coil-helix domain-contain... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01G19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617594 ID=DN617594; Name=DN617594; organism=Citrus sinensis; type=EST; length=759bp
AGAAATTCGATTGTGCAATACTTATTACTATTGATCTTCAAACTTATTTT
CATTGATATTATTGTTATTTTTTCTTTTTAAAACTTCCTAATTCATCTAC
AATATGCCACGACGTGGACGTTCGCCATCTCCGAGCAGAGCTGCACCTAG
ACGTGCCGCCTCTCCTTCCCCACGTGCCGCTCCTGCTCCTTCAAGGCAAA
CCCAGCCAGCACCCGTTCAACAACAGGCGCATCCTCCTGCCACAATGGCA
GCTGCTCCACAACAACCTTCTCTTTTCGGTCAAATGGCTGCTACTGCCGG
TGGTGTAGCAGTTGGTTCGGCCATTGGTCACACTGTAGGACACGCTGTTA
CTGGTATGTTCAGTGGTAGTGGAGATCACGAAGTAGCTCCAGCTGCTGCA
GCTCCTGCCCAACCAGCGACTCAAGGTTACCAGGACCAACAAAGTCAGGC
TAGCTCGCCGTGTGCGTGGGAATTGGGTCAGTTCTTGAAATGTGCCCAAC
AGCAAGATGATTTATCACTGTGCAGTGGATTCAACGAAGCTCTCCGTCAG
TGCAAAGAAATGAACCGTATGGCTTAATTTCTTTCCGAAGAGAGGCTTCA
CGGGAATTAGTGACATAGCGTTACTACTTAGAATATTGCCGTACGACTGA
AGAGATTCTGTGTTCTTTTTCACTACTTACAAGAAGCCTTTTTCTGGATA
CTTAGTAATTCGATAACTGCTTAAAAATGTTTGTGCAAGTAATGTCTTAT
GACCTTTTC
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