DN617591

Overview
NameDN617591
Unique NameDN617591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617591_ssr427 microsatellite DN617591_ssr427:427..436. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5735 contig Csv1_Contig5735:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP+  FSKEVTKHEDAPESEW+ WNWRS GDL++NGAFFT                  +PS+LVGP+T ++GAL C+KG+RC
Sbjct:  327 APNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP+  F KEVTKHE+APESEW+NWNWRSEGDLM+NGA+F                   RPS LV  +T SAGAL+C+KG+RC
Sbjct:  320 APNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP+  F+KEVTKHEDAPES+WR+WNWRSEGD+++NGA+F                   RPS+LVG IT +AG L C++G RC
Sbjct:  328 APNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFF--TXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP+  + KEVTKHEDAPES+WR+WNWRSEGDLM+NGA+F  T                  RPS+LVG IT +AG + CKKG+RC
Sbjct:  321 APNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.764e-20
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFT--XXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            APD + SKEVTKHEDAPE EWRNWNWRSEGDL++NGAFFT                    RPS+ VG IT ++GAL CK+G+ C
Sbjct:  349 APDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKRGSHC 432          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP+    KEVTK+EDAP S+W+ WNWRSEGDL +NGAFFT                  RPS+LV  +T +AGAL C+KG+RC
Sbjct:  327 APNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 3
Query:    6 AAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AAP   F+KEVTK  D P S W+ WNWRSEGDL+ NGA+FT                  + S+LVG IT  AGAL C++G +C
Sbjct:  347 AAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPCRRGRQC 429          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP   F+KEVTK E   ES+W++WNWRSEGDL +NGAFFT                  + S+LVG +T  +GAL C+ G RC
Sbjct:  335 APVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC 416          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    9 APDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AP   F+KEVTK + A + +WR+WNWRSEGDL +NGAFFT                  + S+LVG IT +AGAL C+ G RC
Sbjct:  336 APRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCRGGRRC 417          
BLAST of DN617591 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:    6 AAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTXXXXXXXXXXXXXXXXXXRPSALVGPITGSAGALICKKGARC 254
            AAP   F+KEVTK  +   SEW+ WNWRSEGDL++NGAFF                   +PS++V  IT +AGAL C+KG  C
Sbjct:  388 AAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470          
The following BLAST results are available for this feature:
BLAST of DN617591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PEL18_ARATH2.117e-2257.32Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL8.043e-2257.32Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL11_ARATH1.981e-2053.66Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL18_SOLLC3.379e-2055.95Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL22_ARATH5.764e-2057.14Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH4.880e-1952.44Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL1_ARATH1.736e-1648.19Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL8_ARATH3.273e-1547.56Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH3.273e-1548.78Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL15_ARATH3.273e-1546.99Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617591 ID=DN617591; Name=DN617591; organism=Citrus sinensis; type=EST; length=607bp
ATTCTGCTGCCCCTGACAGGGCGTTCAGCAAAGAAGTGACAAAACATGAG
GATGCACCAGAAAGTGAATGGAGGAATTGGAACTGGAGATCAGAGGGGGA
CTTGATGGTGAACGGTGCATTTTTTACAGCATCAGGAGCAGGCGCCTCAT
CGAGCTATGCAAGAGCTTCGAGCCTAGGTGCTAGACCATCGGCACTTGTC
GGTCCCATAACGGGCTCTGCTGGTGCACTTATCTGCAAGAAGGGGGCTCG
TTGCTGATTATAATTATGACCCCATTTGAAAACAATATTATTTTTTTCTG
CTAGTGATTATTGCGTTTGTTGGGATATAATTAGTTAGATAGAATTAATT
AAAACGGGTAGAAGCCAAAATTGAGGGAACAGGAGAAAAGCCTAACTATA
GTATTTACTTGGCTTTTTCTTCTTCCCTCTCTCTCTTTTTTTTTTTTTTT
TTTTTTTTAATCCTGTGTGCTTTCTACTCTTGTCTTTTTCTTTTTCTTTT
TTCTTTTCTTTCATTTTTACTCAAATCTGATTATTACAACCTCGACTTGT
TGCTCTTAGAACTGTCCGGGGATTCTTTCGAGAATCTTGGCGGGCTAAGA
TAATGCA
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