DN617588

Overview
NameDN617588
Unique NameDN617588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8453 contig Csv1_Contig8453:12..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617588 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.807e-49
Identity = 96/170 (56.47%), Postives = 114/170 (67.06%), Query Frame = -3 
Query:  151 KSYVCSRCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETIKGLAGPSDRREGNEATSKIGSTNFNFGSSVPNGTGVSDMDAKGNVDDPTNY---FSPLNFDTCNFDGFHEFPRPPFDDSENAFSFLIPGSCNYIQKTGGETSLNT 651
            KS+ CSRC+TKKFSVIADLKTHEKHCGK+KWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL+ET    +  + R       +  G   FN GS+        +    G  D    +   FSP+NFDTCNF GFHEFPR  FDDSE++F  LI  +C +  +  GE+  +T
Sbjct:  331 KSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKPSASTSTQRGSSEGGNNNQGMVGFNLGSA---SNANQETTQPGMTDGRICFEESFSPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIANACGFSPRNVGESVSDT 497
The following BLAST results are available for this feature:
BLAST of DN617588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH1.807e-4956.47Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01G16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617588 ID=DN617588; Name=DN617588; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTAATGAACAGCATTTTATTCAAGATGAACAAATT
ACATGAACATGGGAGAACAATGACTTACAAATATAACAGAACTTAGAATC
ATAGACCTCCTTACAGAAGCATAAACCTAAACATAGAAACATCATTTGAG
AGTATTCAAACTCGTCTCCCCACCAGTTTTCTGAATGTAATTACAGGACC
CAGGAATAAGAAAAGAGAATGCATTCTCCGAATCATCAAATGGGGGTCGA
GGAAACTCATGAAATCCATCAAAGTTACACGTATCAAAATTCAATGGTGA
GAAATAATTAGTTGGATCATCAACATTACCCTTAGCATCCATATCGCTAA
CTCCAGTTCCATTAGGAACACTAGATCCAAAGTTGAAATTTGTACTTCCA
ATCTTACTTGTTGCTTCATTGCCTTCTCTCCGATCAGATGGCCCTGCCAG
TCCTTTGATAGTTTCATCAAGTGGAATGGCAGGAGTATGGCCCTGGAACA
ATGCAATGTGTCCAAACAGCTTGTCTTTCCTTGAGAACGTTGTACCACAG
GAACAAAGCCATTTATCCTTGCCACAGTGCTTCTCGTGAGTTTTGAGATC
AGCAATAACTGAGAATTTTTTGGTGTTGCATCTGCTACAAACATAGCTTT
TGT
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