DN617587

Overview
NameDN617587
Unique NameDN617587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617587_ssr507 microsatellite DN617587_ssr507:507..518. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7921 contig Csv1_Contig7921:32..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617587 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 76/161 (47.20%), Postives = 91/161 (56.52%), Query Frame = 3
Query:   81 MDLKEGLRAETWAKSSLAENEMSKRISSNNPCFTDFNSQQYQQKWEDPSILDYDIRINPAFQEFNQPPQNQSSLPCDPTNQIKNPFQMNEN-LQTNKMQDWDPKAMLNNLSFLEQKIHELQDLVHLIVGRRSQILGRPDELVAQQQQLITADLTSIIVQLI 560
            M+ ++ L    W  SS    E        N  F  F SQQ   KWED SILDY++ + P  QE                       Q N + LQ  + Q WDP+ ML+NLSF+EQKIH+LQDLVHL+VGR  Q+ GR DEL AQQQQLIT DLTSII+QLI
Sbjct:    1 METEDDLCNTNWGSSSSKSREPGSS-DCGNSTFAGFTSQQ---KWEDASILDYEMGVEPGLQE---------------------SIQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLI 136          
The following BLAST results are available for this feature:
BLAST of DN617587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STOP1_ARATH7.523e-2947.20Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01G16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617587 ID=DN617587; Name=DN617587; organism=Citrus sinensis; type=EST; length=561bp
AATAGCAAAGACAGCATCTAAGCTAAGTTGAATCTGATTGATTGGGATTT
GGATCTGGTACCTGAGAAAAGGATTTTGAAATGGATCTTAAAGAGGGACT
GCGTGCAGAGACTTGGGCGAAGTCTTCTTTGGCTGAAAATGAGATGTCAA
AAAGGATTTCGTCTAATAACCCATGTTTTACCGATTTCAATTCACAGCAA
TACCAGCAGAAGTGGGAAGATCCCTCCATCTTAGATTATGACATTAGGAT
CAATCCAGCATTTCAAGAATTCAATCAACCTCCTCAAAACCAATCCTCAC
TCCCTTGTGACCCCACTAACCAAATTAAAAATCCATTCCAGATGAATGAG
AATCTCCAAACCAACAAAATGCAAGATTGGGATCCAAAAGCAATGCTAAA
TAATCTTTCATTTTTGGAACAAAAGATCCATGAGCTTCAGGATTTGGTGC
ACTTAATTGTGGGCCGGAGGAGCCAAATTTTGGGTCGACCAGATGAACTT
GTAGCTCAGCAGCAGCAGCTCATTACTGCAGATCTCACTTCAATTATTGT
TCAGTTAATCT
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