DN617584

Overview
NameDN617584
Unique NameDN617584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:22..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.566e-60
Identity = 103/139 (74.10%), Postives = 113/139 (81.29%), Query Frame = 3
Query:  123 RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            +GT GD  GGWQ GHATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYEMKC +DP+WCL  +I VTATNFCPPN  LSNDNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFR++PC KK
Sbjct:   21 QGTHGD-DGGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKK 158          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 3.140e-58
Identity = 94/133 (70.68%), Postives = 112/133 (84.21%), Query Frame = 3
Query:  141 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            YGGGW + HATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+E++CEND KWCLPGSI+VTATNFCPPN AL+N+NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+R++PC ++
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRR 154          

HSP 2 Score: 25.7942 bits (55), Expect = 3.140e-58
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  530 CEERG-IRFTVNGHS 571
            C  RG IRFT+NGHS
Sbjct:  151 CRRRGGIRFTINGHS 165          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.369e-56
Identity = 93/140 (66.43%), Postives = 111/140 (79.29%), Query Frame = 3
Query:  117 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAK 536
            C      D  GGW+ GHATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++CE+DP+WC+PGSIIV+ATNFCPPN AL+NDNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FR++PC K
Sbjct:   20 CLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEK 159          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.414e-54
Identity = 90/135 (66.67%), Postives = 109/135 (80.74%), Query Frame = 3
Query:  135 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            G  GGGW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C+ND KWCLPGSI+VTATNFCPPN AL N+ GGWCNPP QHFD+++P F +IAQYRAGIVP+++R++PC ++
Sbjct:   21 GYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRR 155          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.732e-54
Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 3
Query:  144 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            GG WQ+ HATFY              YGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC NDP+WC  G  SI++TATNFCPPNLA  +DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+R++PC K+
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKR 161          

HSP 2 Score: 24.6386 bits (52), Expect = 5.732e-54
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  530 CEERG-IRFTVNGH 568
            C +RG IRFT+NGH
Sbjct:  158 CRKRGGIRFTINGH 171          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 7.024e-54
Identity = 95/143 (66.43%), Postives = 107/143 (74.83%), Query Frame = 3
Query:  117 CF--RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            CF  R    DYG  WQS HATFY              YGNLYS GYGTNTAALST LFN+G +CGSCYE++C+ND +WCLPGS+ VTATN CPPN AL ND+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+R++PC KK
Sbjct:   16 CFLARRAAADYGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKK 157          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.044e-53
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 3
Query:  147 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFR++PC KK
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKK 152          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.044e-53
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 3
Query:  147 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFR++PC KK
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKK 152          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.951e-52
Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = 3
Query:  141 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            Y  GW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E+KC++D  WCLPG+IIVTATNFCPPN AL N+ GGWCNPPL HFD+++P F +IAQY+AG+VP+S+R++PC ++
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRR 158          
BLAST of DN617584 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.121e-51
Identity = 90/134 (67.16%), Postives = 104/134 (77.61%), Query Frame = 3
Query:  144 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRKIPCAKK 539
            GG W + HATFY              YGNLYSQGYG NTAALSTALFNNGLSCGSC+E+KC NDP WCLPG  SI++TATNFCPPN   ++DNGGWCNPP +HFD+A P FL IA+Y+AGIVP+S+R+IPC KK
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKK 162          
The following BLAST results are available for this feature:
BLAST of DN617584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXPA8_ARATH8.566e-6074.10Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP10_ARATH3.140e-5870.68Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA2_ARATH3.369e-5666.43Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA1_ARATH2.414e-5466.67Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA4_ARATH5.732e-5467.16Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA2_ORYSJ7.024e-5466.43Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ2.044e-5370.99Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.044e-5370.99Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP15_ARATH2.951e-5264.66Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA9_ARATH1.121e-5167.16Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01G14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617584 ID=DN617584; Name=DN617584; organism=Citrus sinensis; type=EST; length=571bp
GCATCTCTCTTTTTCTTAACAAAAAAACACATAAACATAAGCAGCCAGCA
GTAGCAGCCATGGCCAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTT
GTTTGTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTG
GGTGGCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGC
ACAATGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGG
GACTAACACTGCAGCACTTAGTACCGCTCTATTCAACAATGGCCTAAGCT
GTGGTTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTC
CCCGGCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGC
CCTGTCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTG
ACATGGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATC
GTCCCAATTTCCTTCAGAAAGATCCCGTGTGCGAAGAAAGAGGAATAAGG
TTTACCGTCAATGGACACTCA
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