DN617560

Overview
NameDN617560
Unique NameDN617560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617560_ssr29 microsatellite DN617560_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5775 contig Csv1_Contig5775:89..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: AIBP_MOUSE (Apolipoprotein A-I-binding protein OS=Mus musculus GN=Apoa1bp PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 81/163 (49.69%), Postives = 107/163 (65.64%), Query Frame = 1
Query:   79 SDAMSSAQNSDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRL 552
            S+ M+ A    +V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+AY  +   +    VL ICGPGNNGGDGLV AR L  FGY+P + YPKR  KPL+TGLVTQ + + IPFL  +   P+   + ++++V A+FGFSF G  R PF  ++  L
Sbjct:   43 SETMAGA----AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSFKGDVREPFHSILSVL 201          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: AIBP_HUMAN (Apolipoprotein A-I-binding protein OS=Homo sapiens GN=APOA1BP PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 80/159 (50.31%), Postives = 102/159 (64.15%), Query Frame = 1
Query:   91 SSAQNSDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRL 552
            S    S  V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+AY  +   R    VL ICGPGNNGGDGLV AR L  FGY+P + YPKR  KPL+T LVTQ + + IPFL  +   P+   + ++++V A+FGFSF G  R PF  ++  L
Sbjct:   49 SEVMASTVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELYELVVDAIFGFSFKGDVREPFHSILSVL 207          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: AIBP_BOVIN (Apolipoprotein A-I-binding protein OS=Bos taurus GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.070e-35
Identity = 80/159 (50.31%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   91 SSAQNSDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRL 552
            S    S +V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+AY  +   R    VL ICGPGNNGGDGLV AR L  FGY+P + YPKR  KPL+T LVTQ + + IPFL  +   P+   + ++++V A+FGFSF G  R PF  ++  L
Sbjct:   49 SEVMASSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPPEPMLIDELYELVVDAIFGFSFTGEVREPFRSILSVL 207          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: AIBP_PIG (Apolipoprotein A-I-binding protein OS=Sus scrofa GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.183e-34
Identity = 78/154 (50.65%), Postives = 99/154 (64.29%), Query Frame = 1
Query:  106 SDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRL 552
            S +V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+ Y  +   R    VL ICGPGNNGGDGLV AR L  FGY P + YPKR  KPL+T LVTQ + + IPFL  +   P    + ++++V A+FGFSF G  R PF  ++  L
Sbjct:   54 SSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKVYPPTSLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYHPTIYYPKRPNKPLFTALVTQCQKMDIPFLDEMPSEPTLIDELYELVVDAIFGFSFKGEVREPFRSILSVL 207          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: AIBP_DANRE (Apolipoprotein A-I-binding protein OS=Danio rerio GN=apoa1bp PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  115 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEY----DRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPLDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRL 552
            V +L Q EA +IDE L     FSVDQLMELAGLS AT++A+ Y  +       RVL ICGPGNNGGDGLV AR L  FGY+P V YPKR  K L+  L  Q + + IPFL+         + + ++V A+FGFSF G  R PF +++ +L
Sbjct:   53 VKYLGQEEAQQIDEELFSDFSFSVDQLMELAGLSCATAVAKGYPVTSLLKSPARVLVICGPGNNGGDGLVCARHLKLFGYEPSVLYPKRPNKQLFQNLSIQCQKMEIPFLTEMPEADLIDEAYSLVVDAIFGFSFKGAVREPFGEILSQL 202          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: MU182_SCHPO (Meiotically up-regulated gene 182 protein OS=Schizosaccharomyces pombe GN=mug182 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  112 SVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLP--LDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRLL 555
            S+S L+   A  +D  LM    FS+DQLMELAGLSV+ ++   Y  S+Y +VL  CGPGNNGGDGLVAAR L+ +GYKP V YPK +   LY  L  QL+ L IP +   D        +D  ++V ++FGFSF G  R PF  ++  ++
Sbjct:    2 SISCLSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGDGLVAARHLWQYGYKPTVYYPKPSSPELYKRLCKQLDDLDIPVVKSHDSNHFSQLLRDSKLVVDSIFGFSFKGPVRDPFGSILAAIV 151          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: YJEFN_DROAN (YjeF N-terminal domain-containing protein GF19489 OS=Drosophila ananassae GN=GF19489 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 71/146 (48.63%), Postives = 91/146 (62.33%), Query Frame = 1
Query:  115 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPL--DFSKDFDIIVYAMFGFSFHGTPRPPFDDLIK 546
            V +L+Q EA  +D+ L     FSVDQLMELAGLS A +I++ +   +Y RVL  CGPGNNGGDGLV AR L   GY P + YPK T KPLY  L  Q + + I    VED P   + + +FD+IV A+FGFSF    R  F  +++
Sbjct:    2 VKYLSQSEAINVDQELFNDYKFSVDQLMELAGLSCAHAISKCFPTDKYGRVLICCGPGNNGGDGLVCARHLALMGYTPTIYYPKPTAKPLYENLSHQCKLMEI--CRVEDCPAINEAASNFDLIVDALFGFSFKPPVRAEFVAIVE 145          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: YJEFN_DROYA (YjeF N-terminal domain-containing protein GE15417 OS=Drosophila yakuba GN=GE15417 PE=4 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.266e-28
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 1
Query:  115 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLP--LDFSKDFDIIVYAMFGFSFHGTPRPPFDDLIKRL 552
            + +L Q+EA ++D+ L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK T KPL+  L  Q + + I    V++ P     + D+D+I+ A+FGFSF    R  F  +++ L
Sbjct:    3 LKYLNQKEAIDVDQELFTEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLSLMGYTPTIYYPKPTAKPLFENLSHQCQMMDI--CGVKECPSVATAASDYDLILDALFGFSFKPPVRADFVAVVELL 148          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: YJEFN_DROSE (YjeF N-terminal domain-containing protein GM11335 OS=Drosophila sechellia GN=GM11335 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.266e-28
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  115 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPL--DFSKDFDIIVYAMFGFSFHGTPRPPF 531
            + +L Q+EA  +D+ L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK T KPL+  L  Q + + I    V++ P     ++D+D+I+ A+FGFSF    R  F
Sbjct:    3 LKYLNQKEAIAVDQELFNEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLALMGYTPTIYYPKPTAKPLFENLSHQCQQMDI--CDVKECPSVESAARDYDLILDALFGFSFKPPVRADF 141          
BLAST of DN617560 vs. ExPASy Swiss-Prot
Match: YJEFN_DROME (YjeF N-terminal domain-containing protein CG2974 OS=Drosophila melanogaster GN=CG2974 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.266e-28
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  115 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPL--DFSKDFDIIVYAMFGFSFHGTPRPPF 531
            + +L Q+EA  +D+ L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK T KPL+  L  Q + + I    V++ P     ++D+D+I+ A+FGFSF    R  F
Sbjct:    3 LKYLNQKEAIAVDQELFNDYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLALMGYTPTIYYPKPTAKPLFENLSHQCQQMDI--CDVKECPSVESAARDYDLILDALFGFSFKPPVRADF 141          
The following BLAST results are available for this feature:
BLAST of DN617560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AIBP_MOUSE1.070e-3549.69Apolipoprotein A-I-binding protein OS=Mus musculus... [more]
AIBP_HUMAN1.070e-3550.31Apolipoprotein A-I-binding protein OS=Homo sapiens... [more]
AIBP_BOVIN1.070e-3550.31Apolipoprotein A-I-binding protein OS=Bos taurus G... [more]
AIBP_PIG1.183e-3450.65Apolipoprotein A-I-binding protein OS=Sus scrofa G... [more]
AIBP_DANRE1.107e-3249.33Apolipoprotein A-I-binding protein OS=Danio rerio ... [more]
MU182_SCHPO2.308e-3046.00Meiotically up-regulated gene 182 protein OS=Schiz... [more]
YJEFN_DROAN1.496e-2948.63YjeF N-terminal domain-containing protein GF19489 ... [more]
YJEFN_DROYA1.266e-2845.27YjeF N-terminal domain-containing protein GE15417 ... [more]
YJEFN_DROSE1.266e-2846.81YjeF N-terminal domain-containing protein GM11335 ... [more]
YJEFN_DROME1.266e-2846.81YjeF N-terminal domain-containing protein CG2974 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01G02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617560 ID=DN617560; Name=DN617560; organism=Citrus sinensis; type=EST; length=557bp
CCCTGTCTCTCCTCTCGTCTCCAACCAGTCCTCCTCCTCCTCTTTTCAGC
TCCCGCAATTCGTGCGTTTTGCTCAAAATCAGACGCAATGTCGTCGGCAC
AAAATTCCGATTCTGTATCTCATCTCACTCAGCGAGAAGCTGCCGAAATT
GATGAGACTCTCATGGGACCTCTCGGCTTCAGTGTCGATCAGCTTATGGA
ATTGGCTGGTTTGAGTGTAGCAACATCCATAGCAGAGGCTTACAAAGCAA
GTGAATATGATCGTGTGCTTGCGATATGCGGTCCGGGGAACAATGGAGGT
GATGGTTTGGTAGCTGCTCGACAGCTGTATCATTTTGGATACAAGCCGTT
TGTCTGTTATCCAAAGCGTACTCAAAAACCACTTTATACTGGTCTGGTTA
CACAGCTTGAATCGCTATCAATCCCTTTCCTGTCAGTGGAGGATCTACCA
TTGGACTTTTCAAAGGACTTCGATATCATCGTATATGCAATGTTTGGGTT
CTCCTTTCATGGAACCCCAAGGCCACCGTTTGATGATCTGATTAAGAGAC
TGCTTTG
back to top