DN617555

Overview
NameDN617555
Unique NameDN617555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig949 contig Csv1_Contig949:220..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.702e-43
Identity = 81/96 (84.38%), Postives = 91/96 (94.79%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFF 480
            MGIYLS+PKT+KFSEDGEN +LRYGLSSMQGWRA+MEDAHAA  DLDD+TSF GVYDGHGGKVV+KFCAK+LHQQVL ++AYAAGDVGTS+QKAFF
Sbjct:    1 MGIYLSTPKTDKFSEDGENHKLRYGLSSMQGWRASMEDAHAAILDLDDNTSFLGVYDGHGGKVVSKFCAKYLHQQVLSDEAYAAGDVGTSLQKAFF 96          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.982e-42
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFF 480
            MG YLSSPKTEK SEDGEND+LR+GLSSMQGWRATMEDAHAA  DLDD TSFFGVYDGHGGKVVAKFCAK+LHQQV+ N+AY  GDV TS+++AFF
Sbjct:    1 MGTYLSSPKTEKLSEDGENDKLRFGLSSMQGWRATMEDAHAAILDLDDKTSFFGVYDGHGGKVVAKFCAKYLHQQVISNEAYKTGDVETSLRRAFF 96          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.243e-39
Identity = 70/96 (72.92%), Postives = 89/96 (92.71%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFF 480
            MG+YLS+PKTEK SEDGEND+L++GLSSMQGWRATMEDAH+A  D+D+ TSFFGV+DGHGG+VVAKFCAK+LH++VL+++AY+AGD+G +  KAFF
Sbjct:    1 MGVYLSTPKTEKLSEDGENDKLKFGLSSMQGWRATMEDAHSALLDIDNDTSFFGVFDGHGGRVVAKFCAKYLHREVLRSEAYSAGDLGNAAHKAFF 96          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.243e-39
Identity = 72/96 (75.00%), Postives = 89/96 (92.71%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFF 480
            MGIYLS+PKT+KFSEDGEND+L+ GLSSMQGWRA MEDAH+A  +LD+ TSFFGV+DGHGG+VVAKFCAK+LH QVL+++AY+AGD+GT+V +AFF
Sbjct:    1 MGIYLSTPKTDKFSEDGENDKLKLGLSSMQGWRANMEDAHSALLNLDNETSFFGVFDGHGGRVVAKFCAKYLHSQVLRSEAYSAGDLGTAVHRAFF 96          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.102e-38
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFF 480
            MG+YLS+PKTEK+S +G NDRLRYGL+SMQGWR TMEDAH A P LD+ TSFFGVYDGHGGK V+KFCAK LH QVLKN+AY++GD+ TSV K+FF
Sbjct:    1 MGVYLSTPKTEKYSGEGGNDRLRYGLASMQGWRTTMEDAHTALPRLDECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFF 96          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 8.873e-21
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDR---LRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAF 477
            MG YLS P T K S DG       L YG S+MQGWR +MEDAH   P+LD+ T+ F VYDGHGG+ VA +CAK+L   +   KAY  G +  ++Q AF
Sbjct:    1 MGAYLSQPNTVKCSGDGVGAPRLPLPYGFSAMQGWRVSMEDAHNCIPELDNETAMFSVYDGHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALQDAF 98          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.977e-20
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDR---LRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAF 477
            MG YLS P T K S DG       L YG S+MQGWR +MEDAH   P+LD  T+ F VYDGHGG+ VA +CAK+L   +   KAY  G +  +++ AF
Sbjct:    1 MGAYLSQPNTVKCSGDGVGAPRLPLSYGFSAMQGWRVSMEDAHNCIPELDSETAMFSVYDGHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALEDAF 98          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.977e-20
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDR---LRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAF 477
            MG YLS P T K S DG       L YG S+MQGWR +MEDAH   P+LD  T+ F VYDGHGG+ VA +CAK+L   +   KAY  G +  +++ AF
Sbjct:    1 MGAYLSQPNTVKCSGDGVGASRLPLPYGFSAMQGWRVSMEDAHNCIPELDSETAMFSVYDGHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALEDAF 98          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  193 MGIYLSSPKTEKFSEDGENDR---LRYGLSSMQGWRATMEDAHAAYPDLDDSTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAF 477
            MG YLS P T K S DG       L YG S+MQGWR +MEDAH   P+LD  T+ F VYDGHGG+ VA +CAK+L   +   KAY  G +  +++ AF
Sbjct:    1 MGAYLSQPNTVKCSGDGVGAPRLPLPYGFSAMQGWRVSMEDAHNCIPELDSETAMFSVYDGHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALEDAF 98          
BLAST of DN617555 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.728e-19
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  208 SSPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYPDLDDS-TSFFGVYDGHGGKVVAKFCAKFLHQQVLKNKAYAAGDVGTSVQKAFF 480
            S P   KF+++ ENDR++Y +SSMQGW   MEDAHAA  +LDD+ TSFFGVYDGHGG  VA +CAK  H ++  ++ Y + ++  +++ AF+
Sbjct:   53 SLPVESKFTDEKENDRIKYVVSSMQGWGEKMEDAHAAILNLDDTMTSFFGVYDGHGGAEVASYCAKRFHIELCNHEDYDS-NLSNAMRSAFY 143          
The following BLAST results are available for this feature:
BLAST of DN617555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
P2C60_ARATH3.702e-4384.38Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH6.982e-4282.29Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C58_ORYSJ3.243e-3972.92Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ3.243e-3975.00Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C70_ORYSJ2.102e-3875.00Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
PPM1G_MOUSE8.873e-2151.02Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]
PPM1G_MACFA1.977e-2050.00Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_BOVIN1.977e-2050.00Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PPM1G_HUMAN2.582e-2050.00Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
P2C20_ORYSJ3.728e-1950.00Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617555 ID=DN617555; Name=DN617555; organism=Citrus sinensis; type=EST; length=480bp
CTTTCGACTCTTATCTTTTCAGTTTTCTTTCTCTTTTTTCTTGCCTAAAT
ACCCGTCTCTTTCTTGATTTCTTCTTTTTTTTTTTCATCATCAAAATATC
TTCTTTTCTTCTTAGTTTTCCCAGAATTTTCTCTTCTGGTTATTCTTTTG
GGTTTTGGCAAAGATTCACTTCTTGTTATTGGGCATATATAGATGGGCAT
ATATTTGAGTAGTCCGAAGACTGAGAAATTCTCAGAAGATGGTGAAAATG
ATAGGCTCAGATATGGTTTATCGTCCATGCAAGGGTGGCGTGCAACAATG
GAAGATGCCCATGCTGCATATCCTGATTTGGATGATTCTACTTCATTCTT
TGGTGTTTATGATGGTCATGGAGGGAAGGTAGTTGCAAAGTTTTGTGCCA
AGTTTCTTCACCAGCAAGTTCTCAAGAATAAAGCTTATGCAGCTGGAGAT
GTAGGAACTTCCGTTCAGAAAGCTTTTTTC
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