DN617554

Overview
NameDN617554
Unique NameDN617554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617554_ssr602 microsatellite DN617554_ssr602:602..613. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9148 contig Csv1_Contig9148:31..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.499e-37
Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = -3
Query:  398 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 637
            DIN+VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +++ES +SAVCERVL+RCLAPST GGEGCDNMTMI+VQFKKPI
Sbjct:  254 DINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFKKPI 333          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.722e-36
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = -3
Query:  398 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 637
            DIN VELCDDDDF+VLACDGIWDCMSSQQLVDFIHE +  ES +SAVCERVL+RCLAPST GGEGCDNMTM++VQFKKPI
Sbjct:  254 DINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFKKPI 333          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 64/79 (81.01%), Postives = 77/79 (97.47%), Query Frame = -3
Query:  401 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 637
            D+N+VELCDDDDF+VLACDGIWDCM+SQQLVDFIHEQL+SE+K+S VCE+VL+RCLAP+T+GGEGCDNMTMI+V+FK P
Sbjct:  254 DVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFKNP 332          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.942e-34
Identity = 62/79 (78.48%), Postives = 75/79 (94.94%), Query Frame = -3
Query:  401 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 637
            DIN+++LCDDDDF+V+ACDGIWDCMSSQ+LVDFIHEQL SE+K+S VCE+V++RCLAP TA GEGCDNMT+I+VQFKKP
Sbjct:  254 DINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFKKP 332          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 50/79 (63.29%), Postives = 73/79 (92.41%), Query Frame = -3
Query:  401 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 637
            ++N+V+L +DD+F+VLACDGIWDCMSSQ++VDF+H+++++E  +SAVCE++L+ CLAP  +GG+GCDNMT+IIV+FKKP
Sbjct:  253 ELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAP-VSGGDGCDNMTVIIVKFKKP 330          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  398 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKKPI 637
            DI  + +  +D+F+VLACDGIW+ MSS+++V+F+  +L    K+S +CE + + CLAP+T G G GCDNMT +IVQFKK +
Sbjct:  488 DIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFKKKL 568          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  407 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 637
            DI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  420 DIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 503          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  407 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 637
            DI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  424 DIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 507          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  407 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 637
            DI  + L DD +F+V+ACDGIW+ MSSQ++VDFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  423 DIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 506          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  407 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESK------ISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFK 637
            DI  + L DD +F+V+ACDGIW+ MSSQ+++DFI  ++    +      +S++ E +L++CLAP T+G G GCDNMT II+ FK
Sbjct:  421 DIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 504          
The following BLAST results are available for this feature:
BLAST of DN617554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
P2C58_ORYSJ7.499e-3786.25Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ3.722e-3685.00Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C60_ARATH2.412e-3581.01Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C21_ARATH5.942e-3478.48Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C70_ORYSJ2.418e-2763.29Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME5.399e-1950.62Probable protein phosphatase CG10417 OS=Drosophila... [more]
PPM1G_MOUSE2.508e-1648.81Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]
PPM1G_MACFA2.508e-1648.81Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN2.508e-1648.81Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN3.276e-1647.62Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617554 ID=DN617554; Name=DN617554; organism=Citrus sinensis; type=EST; length=639bp
CCCCCCCTTTTTTTTTTGTTAACACACATCAAATAAACAAACGAGAGATT
GCTATGCTTGATGCACTTCAAAAACTTGTACATGTCGAAAGTTCTAATAG
TGGTTTTGTCAAAGCTAAAAGCACACATGAACATGAACAAATGAATTTTG
TAAACATTTCATTTATTTTTTCTTTTTTCTCAGTGCTGGACCATCTACAA
GTACACACGTCTTTGATCCCAATTTTTCAACGAAAGGGATTCTTGCATTG
TCTTATGGGCAAAGGAACCAGAATCGTGCAGCCTGACATAGTGGTACATT
ACAGCGGCTACTTTGATTCACTTTCCTCGGGTAGTGGACTTGAGTCATCT
GATTTGAATTCCAAGGACTGTTGACTAGAAGTGGAGGAAGTGGACTGGAT
TGGTTTCTTGAACTGCACTATGATCATGGTCATGTTGTCACATCCCTCAC
CTCCAGCTGTTGATGGCGCCAAACATCTCTCGAGTACTCTCTCGCACACA
GCAGAAATCTTGCTTTCCGAATGTAGTTGTTCATGAATAAAATCTACTAA
TTGCTGGCTTGACATGCAATCCCAGATTCCATCACACGCCAGCACAACGA
AATCATCATCATCACACAGCTCAACAGAGTTTATATCTG
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