DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 84/130 (64.62%), Postives = 105/130 (80.77%), Query Frame = -3
Query:   97 FHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 486
            FHGLRVQG+RVGN E+PN+K L+T LQ VYGIGR ++HQ+LC L I NKL ++LTG EL  LREEV ++  G++LRR + ++++RLV++ CYRG RH  GLPCRGQRTSTNART+KGK VAI GKKK  R
Sbjct:   24 FHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.308e-35
Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = -3
Query:   97 LRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 477
            L ++  RVG  EIP +KR+E SLQ+++GIGR+RA QIL DL + NK+TK++   EL  LR+EVS+Y+   DLRR     ++RL +IQCYRG+RH QGLPCRGQRT  N RT KGK++AI GKKK ++
Sbjct:   43 LSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 67/124 (54.03%), Postives = 92/124 (74.19%), Query Frame = -3
Query:  130 LQFHGLRVQGLRVGNT---EIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 492
            L  HG+RVQ + +G     EIP++KRL  +LQ+++GIGRS+A  I+ +L + NK  K+L+  EL S+RE +S+YL G DL++C++ DV RLV IQCYRGIRH   LPCRGQRT TNARTR+ ++
Sbjct:   19 LSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRK 142          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.949e-27
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+    IP++KR+  SL+++YGIG ++A +I   L IG +K   +L+  E+  +RE + R Y    DLRR +  +++RLVD+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK TR
Sbjct:    3 RIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.185e-26
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR-VAIPGKKKPTR 459
            R+   +IP +KR+E SL ++YGIGR+ + +IL   NI  N   K+LT  E+  LRE + +  T E DLRR ++ +++RL+DI CYRGIRH +GLP RGQRT TNARTR+GK+  AI GKKK T+
Sbjct:    3 RISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKATK 126          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOLS (30S ribosomal protein S13 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsM PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.185e-26
Identity = 59/120 (49.17%), Postives = 84/120 (70.00%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGR+ A  IL   +I G+  T +LT  E+  LREE+ + +  E DLRR +  +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGIDLPKNKRIEIALTYIYGIGRTTAKNILVATSIDGSTRTDKLTEAEIGKLREEIDKNVKVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_AZOSB (30S ribosomal protein S13 OS=Azoarcus sp. (strain BH72) GN=rpsM PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 61/119 (51.26%), Postives = 81/119 (68.07%), Query Frame = -3
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN--IGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            R+    IPN K  E +L  +YGIGRSRA +I CD    + +   K+LT  ++  LR+EV R++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI GKK
Sbjct:    3 RIAGVNIPNHKHAEIALTAIYGIGRSRAQKI-CDAAGVVRSAKIKDLTESDMEKLRDEVGRFVVEGDLRREVTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            RV N EIPN KR   SL +++GIG++ A QIL D N+  NK  + L+  EL  +REE  +Y+T  DLRR I  +++RL++I+ YRGIRH +GLP RGQ T  NARTRKG R  I GKK
Sbjct:    3 RVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_DECAR (30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            R+    IPN +  E +L  ++GIGR+RA +I     +G N   K+L+  +++ LR+EV ++    DLRR +  +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct:    3 RIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEVGKFTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKAIAGKK 120          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_AZOSE (30S ribosomal protein S13 OS=Azoarcus sp. (strain EbN1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.883e-26
Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            R+    IPN K  E +L  +YGIGRSRA +I    N+   +  K+LT  ++  LR+EV++++   DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI GKK
Sbjct:    3 RIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEVAKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120          
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RT13_ARATH4.332e-4564.62Small ribosomal subunit protein S13, mitochondrial... [more]
RR13_ARATH5.308e-3556.6930S ribosomal protein S13, chloroplastic OS=Arabid... [more]
RT13_SOYBN6.489e-3354.03Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_ACICJ6.949e-2751.2230S ribosomal protein S13 OS=Acidiphilium cryptum ... [more]
RS13_HERA21.185e-2652.4230S ribosomal protein S13 OS=Herpetosiphon auranti... [more]
RS13_GEOLS1.185e-2649.1730S ribosomal protein S13 OS=Geobacter lovleyi (st... [more]
RS13_AZOSB2.022e-2651.2630S ribosomal protein S13 OS=Azoarcus sp. (strain ... [more]
RS13_MYCA53.449e-2653.3930S ribosomal protein S13 OS=Mycoplasma arthritidi... [more]
RS13_DECAR5.883e-2648.3130S ribosomal protein S13 OS=Dechloromonas aromati... [more]
RS13_AZOSE5.883e-2650.0030S ribosomal protein S13 OS=Azoarcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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