DN617545

Overview
NameDN617545
Unique NameDN617545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617545_ssr581 microsatellite DN617545_ssr581:581..600. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617545_ssr601 microsatellite DN617545_ssr601:601..624. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5732 contig Csv1_Contig5732:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617545 vs. ExPASy Swiss-Prot
Match: ZDHC8_ARATH (Probable S-acyltransferase At3g22180 OS=Arabidopsis thaliana GN=At3g22180 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.785e-21
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  178 MVRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFLGGHIWEYALFATYSPV 336
            MVRKHGWQLPAHT QV+AITVFCLLVVAFYAFFAPF+GG IWEY L   YSPV
Sbjct:    1 MVRKHGWQLPAHTLQVIAITVFCLLVVAFYAFFAPFVGGRIWEYVLIGVYSPV 53          
BLAST of DN617545 vs. ExPASy Swiss-Prot
Match: ZDH17_ARATH (Probable S-acyltransferase At4g15080 OS=Arabidopsis thaliana GN=At4g15080 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1
Query:  178 MVRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFLGGHIWEYALFATYSPV 336
            MVRKHGWQLPAH FQVVAITVFCLL VA+YAFFAPF+GG IWEY L   YSPV
Sbjct:    1 MVRKHGWQLPAHKFQVVAITVFCLLSVAYYAFFAPFVGGRIWEYILLGVYSPV 53          
BLAST of DN617545 vs. ExPASy Swiss-Prot
Match: ZDHC3_ARATH (Probable S-acyltransferase At2g33640 OS=Arabidopsis thaliana GN=At2g33640 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  178 MVRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFLGGHIWEYALFATYSPVVCEFPLNYYFNMFKIIIVYL 396
            M R+HGWQLPAHTFQVVAITVF LL VA+YAFFAPFLG  ++EY     YS           F  F ++++Y+
Sbjct:    1 MARRHGWQLPAHTFQVVAITVFFLLTVAYYAFFAPFLGNKLYEYIAIGVYS-----------FLAFSVLVLYI 62          
BLAST of DN617545 vs. ExPASy Swiss-Prot
Match: ZDHC1_ARATH (Probable S-acyltransferase At1g69420 OS=Arabidopsis thaliana GN=At1g69420 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  181 VRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFLGGHIWEYALFATYSPVV 339
            +RKHGWQLP H  QVVA+ VF  L  AFY FFAPF+G  I +Y     Y+P++
Sbjct:    1 MRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKIHQYIAMGIYTPLI 53          
The following BLAST results are available for this feature:
BLAST of DN617545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ZDHC8_ARATH2.785e-2184.91Probable S-acyltransferase At3g22180 OS=Arabidopsi... [more]
ZDH17_ARATH3.079e-2083.02Probable S-acyltransferase At4g15080 OS=Arabidopsi... [more]
ZDHC3_ARATH6.009e-1654.79Probable S-acyltransferase At2g33640 OS=Arabidopsi... [more]
ZDHC1_ARATH9.928e-1154.72Probable S-acyltransferase At1g69420 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01F18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617545 ID=DN617545; Name=DN617545; organism=Citrus sinensis; type=EST; length=665bp
CTTTTTTTTAATATTTATTATGTGTTTATCATTTTTGCTTTTTTGCTTTA
CAGGGGGAAGTGCCGAACTGGGAAGTGGGAACTTCAATTTACTGTGTCTC
TTTCTGTCTGTCTCTTCTAGGTTCACCGTGTGTGTTAGGGTTTCTGTGGG
TTTTAAGGTGGGAGAATTTTGACAGTTATGGTGAGAAAACATGGATGGCA
ACTACCTGCACACACGTTTCAGGTTGTTGCAATTACTGTATTTTGCTTGT
TAGTAGTCGCATTCTATGCTTTCTTCGCTCCTTTCCTTGGAGGCCACATC
TGGGAATATGCTTTGTTTGCTACTTATTCACCAGTGGTATGTGAGTTCCC
TTTAAATTACTATTTTAATATGTTCAAGATTATTATTGTATACTTGTGAA
ATGGCATAAAAGTTGCACCAGTCGCAAGTCTCAAACCAGAGCTACACCGG
GAGGTTTCTGGATTATCAAACAGAAAAATCAAAAAGATCAATGTCTACTG
TGTAAACTTAAAATGAGGATTGGTAGTTGGGACTGTTCATTCCATGTATG
ACAACAAGGTTCTATTCTTATTAAGGCATCCTCTCTCTCTCTCTCTCTCT
CACACACACACACACACACACACACGAGAAAAAGGCTGGCAGTCTAACCT
GGATAAGCTGTTCCT
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