DN617542

Overview
NameDN617542
Unique NameDN617542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5725 contig Csv1_Contig5725:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.621e-29
Identity = 86/210 (40.95%), Postives = 113/210 (53.81%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP  L+QCFAYCA+FPKD  ++KE L+ LWMA GFL LS  N   EDVG+E +  L  RSFFQ+ E    GN    KIHDL+HDLA S+     +   +   NV +  H +S   GF + +                             SY   ++  F  LR LNLS S++E +PS IG L HLRY +LS N + +SLP+ + +L NL
Sbjct:  400 LPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEAKS-GNTY-FKIHDLIHDLATSLFSASASCGNIREINVKDYKHTVSI--GFAAVV----------------------------SSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCN-NFRSLPERLCKLQNL 575          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.143e-28
Identity = 86/210 (40.95%), Postives = 110/210 (52.38%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP  L+QCFAYCA+FPKD  I KE L+ LWMA  FL LS  N   EDVG+E +  L  RSFFQ+ E          K+HDL+HDLA S+     +   +   NV +           D  + F        N +  +S  +S    ++  SY   +   F  LR LNLSNSE E +PS +G L HLRY +LS N  I SLP  + +L NL
Sbjct:  398 LPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFL-LSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF--KMHDLIHDLATSMFSASASSRSIRQINVKD-----------DEDMMFIVT-----NYKDMMSIGFS----EVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGN-KICSLPKRLCKLQNL 583          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.370e-27
Identity = 79/210 (37.62%), Postives = 104/210 (49.52%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP  L+QCF YCA+FPKD  + KE L+  WMA GFL LS  N   EDVG+E +  L  RSFFQ+ E +        K+HDL+HDLA S+     +   +   N N          G+  S+ F   +                       SY   ++  F  LR LNL NS +  +PS IG L HLRY +LS N  I++LP  + +L NL
Sbjct:  398 LPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF--KMHDLIHDLATSLFSANTSSSNIREINAN--------YDGYMMSIGFAEVV----------------------SSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNL 574          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.623e-26
Identity = 81/210 (38.57%), Postives = 105/210 (50.00%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP  LKQCFAYCA+FPKD  + KE+L+ LWMA GFL LS  N   EDVG E +  L  RSFFQ+ E  +       K+HDL+HDLA S+     +   +   N +  TH +S   GF   + F                            Y    +  F  LR LNL +S    +PS IG L HLRY NL + + ++SLP  + +L NL
Sbjct:  399 LPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFL-LSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF--KMHDLIHDLATSLFSANTSSSNIREINKHSYTHMMSI--GFAEVVFF----------------------------YTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNL-YGSGMRSLPKQLCKLQNL 574          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.698e-25
Identity = 79/214 (36.92%), Postives = 124/214 (57.94%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLD-ARNVNERTHHIS-CVSGFDSSLEFPTALLRAKNLRTFL--STVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP  LK+CFA C++FPK ++  +E+LVLLWMA   L     ++  ED+G++Y   L+++SFFQ  +      +    +HDLM+DLA++V+G  C +++ D    +   T H S   S  D+S+ F  ++  A+ LRT L  ++  S    QL E   N ++++   LR L+LS+ +I  +P  +  LK LRY +LS +  IK LP+ V  L NL
Sbjct:  414 LPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDI----TMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPEIPSTTRHFSFSRSQCDASVAF-RSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLS-STKIKELPEFVCTLCNL 621          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.428e-25
Identity = 74/215 (34.42%), Postives = 124/215 (57.67%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDAR-NVNERTHHISCV-SGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQ--LNESYCNKIVSSFKCLRTLNLSNSEIETV-PSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP+ LK+CFAYC++FPK +   K+++VLLWMA+GFL  +  ++  E++G+EYF  L SRS  Q  +        R  +HD +++LA+  +G   +K +   +  V+ERT ++S +   +   +EF  AL   K LRTFL    ++S R   L++    K++ +   LR L+LS+ +I  + P     + H R+ +LS   +++ LP S+  + NL
Sbjct:  422 LPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK-------TRYIMHDFINELAQFASGEFSSKFEDGCKLQVSERTRYLSYLRDNYAEPMEF-EALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLS-RTELEKLPKSLCYMYNL 627          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 67/219 (30.59%), Postives = 112/219 (51.14%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTE--CAKVKLDARN-------VNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LP PLK+CF YC+LFP +Y + +++L+ +WMAQ F+   I     E+V   Y   L+ R+  Q   ++ +G     K+HD++ ++A SV+  E  C     D+          N  + H+ C+       E     +RA NL + L  V SS+  ++      +++ S   LR L+L +S I  +P  +  + +L+Y NLS    +K LP +  +L+NL
Sbjct:  427 LPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVE-PIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHL-CI-----QKEMTPDSIRATNLHSLL--VCSSAKHKM------ELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLS-KTQVKELPKNFHKLVNL 629          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: R13L3_ARATH (Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.125e-14
Identity = 68/223 (30.49%), Postives = 101/223 (45.29%), Query Frame = 2
Query:   14 LKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNE--------------SYCNKIVSSFKCLRTLNL------SNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRL 622
            LK CF Y ++FP+DY I  E+L+ L +A+GF+    +    EDV   Y   L+ RS  + AE  E G ++ C+IHDL+ DLA   A       +L+  NV     H S +                + +   L   Y   DR++N+               Y N      K LR LN+      S +   T+P +IG+L HLRY  ++ +  +  LP S+S L
Sbjct:  417 LKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFI-QEDEEMMMEDVARCYIDELVDRSLVK-AERIERGKVMSCRIHDLLRDLAIKKA------KELNFVNVYNEKQHSSDIC--------------RREVVHHLMNDYYLCDRRVNKRMRSFLFIGERRGFGYVNTTNLKLKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLGIA-DTYVSILPASISNL 616          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: DRL3_ARATH (Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 62/233 (26.61%), Postives = 105/233 (45.06%), Query Frame = 2
Query:   14 LKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAG-------TECAK--VKL----------DARNVNERTHHISCVSGFDSSLEFPTALLRAKNL--------RTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            +K CF YC+LFP+DY + KE+L+  WM +GF+  + D     + GH+   SL+      D E        + K+HD++ ++A  +A        T C K  V+L            R ++   + I+ +S   +S    T LL+   L        R   + V     R  + S   + +S    L+ +NLS + I+ +P    +LK L + NL    +++S+    + L NL
Sbjct:  475 VKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGEL-----TTKVKMHDVIREMALWIASNFGKQKETLCVKPGVQLCHIPKDINWESLRRMSLMCNQIANISSSSNSPNLSTLLLQNNKLVHISCDFFRFMPALVVLDLSRNSSLSSLPEAISKLGSLQYINLSTTGIKWLPVSFKELKKLIHLNLEFTDELESIVGIATSLPNL 702          
BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 61/214 (28.50%), Postives = 98/214 (45.79%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNS----EIETVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRLLNL 631
            LPS LK C    +L+P+D +I K+QLV  W+ +GF+ +  + +   + G + F  L +R   +  +    G II CKIHD++ DL   +A  +      +   +N R  H+     FD        +     LR  +ST  +    +LN     K  +  K LR L++S S     +  +   I  L+HL   +LS+   +   P S+  L NL
Sbjct:  411 LPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFV-MWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFS---NPEGLNCR--HLGISGNFDEK-----QIKVNHKLRGVVSTTKTGEVNKLNSDLAKKF-TDCKYLRVLDISKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNL 612          
The following BLAST results are available for this feature:
BLAST of DN617542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RGA4_SOLBU9.621e-2940.95Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU2.143e-2840.95Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA1_SOLBU2.370e-2737.62Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU7.623e-2638.57Disease resistance protein RGA2 OS=Solanum bulboca... [more]
DRL21_ARATH1.698e-2536.92Putative disease resistance protein At3g14460 OS=A... [more]
R13L1_ARATH8.428e-2534.42Putative disease resistance RPP13-like protein 1 O... [more]
RPM1_ARATH3.792e-1730.59Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
R13L3_ARATH5.125e-1430.49Putative disease resistance RPP13-like protein 3 O... [more]
DRL3_ARATH1.142e-1326.61Probable disease resistance protein At1g15890 OS=A... [more]
R13L4_ARATH1.491e-1328.50Disease resistance RPP13-like protein 4 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617542 ID=DN617542; Name=DN617542; organism=Citrus sinensis; type=EST; length=632bp
TCTGCCATCACCATTGAAACAGTGCTTTGCTTACTGTGCATTGTTTCCCA
AAGATTATCTAATAGTGAAGGAGCAACTGGTTTTACTTTGGATGGCACAA
GGGTTTCTTGGGCTATCAATCGACAACCAATGTCCAGAAGATGTTGGTCA
TGAGTATTTTATGAGTTTGCTTTCGAGGTCATTTTTTCAAGATGCAGAAT
ATGATGAATGGGGAAATATAATCAGATGCAAGATTCATGATCTCATGCAT
GATCTAGCAGAGTCAGTTGCTGGAACTGAGTGTGCCAAGGTGAAACTGGA
TGCAAGAAATGTTAATGAAAGGACTCATCACATTTCATGTGTTTCTGGTT
TCGATTCATCACTGGAATTTCCAACTGCATTGCTTAGAGCTAAGAATCTA
AGAACCTTTCTTTCGACAGTTTATTCTTCATCTGACAGGCAACTAAATGA
GTCCTACTGTAACAAAATCGTGTCTAGTTTTAAGTGTTTGCGAACGTTAA
ATTTGAGTAATTCGGAGATTGAGACAGTTCCAAGTTTGATTGGGAAGCTG
AAGCACCTGCGATATTTCAACCTTTCTCATAATGCTGATATTAAAAGCCT
TCCTGACTCTGTGTCAAGATTGTTGAATCTCC
back to top