DN617539

Overview
NameDN617539
Unique NameDN617539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2623 contig Csv1_Contig2623:358..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617539 vs. ExPASy Swiss-Prot
Match: MED10_AEDAE (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = -1 
Query:  310 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 522
            ++ VP EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL++TFP E+  Y+ IR +
Sbjct:   59 DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYKAIRGD 129
[Close]
BLAST of DN617539 vs. ExPASy Swiss-Prot
Match: MED10_ANOGA (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 28/71 (39.44%), Postives = 47/71 (66.20%), Query Frame = -1 
Query:  310 NIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 522
            ++ VP EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL +TFP E+  Y+ IR +
Sbjct:   59 DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYKAIRGD 129
The following BLAST results are available for this feature:
BLAST of DN617539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MED10_AEDAE3.321e-1239.44Mediator of RNA polymerase II transcription subuni... [more]
MED10_ANOGA7.397e-1239.44Mediator of RNA polymerase II transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01F15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617539 ID=DN617539; Name=DN617539; organism=Citrus sinensis; type=EST; length=528bp
ATATCACAAATCATGGTAGCTCGGGTATACAACATAATAGGAATGCATTT
GAAGCACGTATTACCGGCCATTGGTTTATTCTAAATGAAATTGCTTCATT
AATGGTATACAGTAAACCAAATTTTTTCAGATTTAATCATTGAATGCTGC
TGAACTGGAACGACTCATGACATTACATTGAGAAAGCAGTAGTCGAAAGA
GCCCCAACACTCTGCATGAAACTGACATTTAAAGCTCAGATTTAACTTTC
ACATCTCCATTTGGTAACATACTTTGTGATTGAGCAAGACGCTTTGCTTC
AGCAGCAGAATTTGCACGTATCTCTCTATATGCTTCAACTTCATCTGGAA
ATGTCTGCTCAAGTTCGTCCAAAAGATGCTTTCGTAAACTCTTGAAAGCA
TCAGTTTTTCCTTTGGTGACTTGGTTTTTAGCAATGCAGCTGTTTATAAC
ATCCCTTGTGAATTCATCAGGATTTTTTCCGTCATCAATCAAATTAAGCA
CTTCCGTGGGCACTTGAATATTGCACTT
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