DN617537

Overview
NameDN617537
Unique NameDN617537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:974..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.695e-33
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQYYSRDAAN
Sbjct:  315 VGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN 386          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB2_ARATH (V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.281e-32
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD  N
Sbjct:  416 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDTTN 487          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB2_HORVU (V-type proton ATPase subunit B 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.979e-32
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRDA +
Sbjct:  412 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDATH 483          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERKFVAQGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLD +YSRDAA+
Sbjct:  417 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAAH 488          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB3_ARATH (V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.522e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD+ +
Sbjct:  416 VGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 487          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB1_ARATH (V-type proton ATPase subunit B1 OS=Arabidopsis thaliana GN=VHA-B1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.522e-31
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERKFV QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KTLDQ+YSRD+ +
Sbjct:  415 VGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS 486          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB1_GOSHI (V-type proton ATPase subunit B 1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.294e-31
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VGEEALSSEDLLYLEFLDKFERK V QGAYD+RNIFQSLDLAWTLLRIFPRELLHRIP KT DQYYSRDA N
Sbjct:  417 VGEEALSSEDLLYLEFLDKFERKVVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTHDQYYSRDAGN 488          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB2_ACEAT (V-type proton ATPase subunit B 2 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEALSSEDLLYLEFLDKFERKFV QG Y++R IF SLDLAWTLLR+FP+ELL RI  KTL++ Y R
Sbjct:  422 VGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB1_ACEAT (V-type proton ATPase subunit B 1 OS=Acetabularia acetabulum PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEALSSEDLLYLEFLDKFERKFV QG Y++R IF SLDLAWTLLR+FP+ELL RI  KTL++ Y R
Sbjct:  422 VGEEALSSEDLLYLEFLDKFERKFVNQGHYEARTIFDSLDLAWTLLRLFPKELLRRITAKTLEKMYER 489          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -3
Query:  394 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 606
            VGEEALS ED L LEFL KFE+ F++QGAY++R IF++LDLAW+LLRIFPRE+L RIP K LDQYYSR +A
Sbjct:  417 VGEEALSQEDRLALEFLGKFEKTFISQGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSSA 487          
The following BLAST results are available for this feature:
BLAST of DN617537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
VATB2_GOSHI2.695e-3395.83V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
VATB2_ARATH2.281e-3293.06V-type proton ATPase subunit B2 OS=Arabidopsis tha... [more]
VATB2_HORVU2.979e-3293.06V-type proton ATPase subunit B 2 OS=Hordeum vulgar... [more]
VATB1_HORVU5.082e-3293.06V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
VATB3_ARATH2.522e-3190.28V-type proton ATPase subunit B3 OS=Arabidopsis tha... [more]
VATB1_ARATH2.522e-3190.28V-type proton ATPase subunit B1 OS=Arabidopsis tha... [more]
VATB1_GOSHI3.294e-3191.67V-type proton ATPase subunit B 1 OS=Gossypium hirs... [more]
VATB2_ACEAT1.482e-2377.94V-type proton ATPase subunit B 2 OS=Acetabularia a... [more]
VATB1_ACEAT1.482e-2377.94V-type proton ATPase subunit B 1 OS=Acetabularia a... [more]
VATB_SCHPO7.356e-2371.83V-type proton ATPase subunit B OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617537 ID=DN617537; Name=DN617537; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTGGAAAACATTCGAACAGGTTTTTTTCCCTCTCAAGGATAAAGT
CCAACAAAGACAGAATTACAGGATAAATAGAATAATCATCAAACTTGGGC
ATTATAATCCTCACTACCATGGTTTCAATATTGATAAAAAGTATCCAGAT
CACACTAATAAATAGAGATACAGGAATTACAAGATCTAAAAAGCACTCCG
CTGAAAGAATATTTGCATCTTTTGACTAGACGAAGAGCTTTGCACGGGGG
CCTCAAGTGGACTACAACCTTTATTATTTCTGCTCAACGGAGAAATGCAA
CCTATATCAAAAAGCTGGTGAATAAACAAATTGTCGACAAAACCAACGAG
GCAGCAAGGTACATGTCAGTACGAGAGACCTTCTTCATCAATTAGCTGCA
TCACGGCTGTAGTACTGGTCAAGGGTCTTTCCTGGTATACGATGGAGAAG
CTCACGAGGAAAGATGCGAAGAAGTGTCCATGCCAGATCAAGAGATTGGA
AGATATTCCTAGAGTCATAAGCTCCTTGAGCAACAAATTTTCTCTCAAAC
TTATCCAGGAACTCTAAGTACAGCAGATCCTCAGAAGAAAGTGCTTCTTC
TCCGACCA
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