DN617534

Overview
NameDN617534
Unique NameDN617534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617534 vs. ExPASy Swiss-Prot
Match: PPDE2_XENLA (PPPDE peptidase domain-containing protein 2 OS=Xenopus laevis GN=pppde2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.383e-17
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 2 
Query:   89 GSTTAGKPNEVLKLGETHVSEELFDEYLNGLRQSRFSNGTYDLFKHNCNTFTNELSQFLTGEGIPQDILSLPDEIL 316
            G T  G+P+ V++LG T V+EE+F EYL+ L +S FS  +Y LF HNCNTF+NE++QFLTG+ IP  I  LP E+L
Sbjct:   62 GRTMLGEPDSVMELGITEVTEEIFLEYLSSLGESGFSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITELPSEVL 137
[Close]
BLAST of DN617534 vs. ExPASy Swiss-Prot
Match: PPDE2_RAT (PPPDE peptidase domain-containing protein 2 OS=Rattus norvegicus GN=Pppde2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.965e-17
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:   89 GSTTAGKPNEVLKLGETHVSEELFDEYLNGLRQSRFSNGTYDLFKHNCNTFTNELSQFLTGEGIPQDILSLPDEIL 316
            G T  G P+ V+ +G T V+EE+F EYL+ L +S F    Y+LF+HNCNTF+NE++QFLTG  IP  I  LP E+L
Sbjct:   61 GGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVL 136
[Close]
BLAST of DN617534 vs. ExPASy Swiss-Prot
Match: PPDE2_MOUSE (PPPDE peptidase domain-containing protein 2 OS=Mus musculus GN=Pppde2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.965e-17
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:   89 GSTTAGKPNEVLKLGETHVSEELFDEYLNGLRQSRFSNGTYDLFKHNCNTFTNELSQFLTGEGIPQDILSLPDEIL 316
            G T  G P+ V+ +G T V+EE+F EYL+ L +S F    Y+LF+HNCNTF+NE++QFLTG  IP  I  LP E+L
Sbjct:   61 GGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVL 136
[Close]
BLAST of DN617534 vs. ExPASy Swiss-Prot
Match: PPDE2_HUMAN (PPPDE peptidase domain-containing protein 2 OS=Homo sapiens GN=PPPDE2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.965e-17
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:   89 GSTTAGKPNEVLKLGETHVSEELFDEYLNGLRQSRFSNGTYDLFKHNCNTFTNELSQFLTGEGIPQDILSLPDEIL 316
            G T  G P+ V+ +G T V+EE+F EYL+ L +S F    Y+LF+HNCNTF+NE++QFLTG  IP  I  LP E+L
Sbjct:   61 GGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVL 136
The following BLAST results are available for this feature:
BLAST of DN617534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPDE2_XENLA1.383e-1755.26PPPDE peptidase domain-containing protein 2 OS=Xen... [more]
PPDE2_RAT8.965e-1752.63PPPDE peptidase domain-containing protein 2 OS=Rat... [more]
PPDE2_MOUSE8.965e-1752.63PPPDE peptidase domain-containing protein 2 OS=Mus... [more]
PPDE2_HUMAN8.965e-1752.63PPPDE peptidase domain-containing protein 2 OS=Hom... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617534 ID=DN617534; Name=DN617534; organism=Citrus sinensis; type=EST; length=651bp
GTTGCACGTCCAACAAATTATGTAATTCAAACTATTTGCATTTTTGTATT
TTCATAAATAAAATTTACATTGGTTAATTCGTCTTTAGGGAAGCACCACC
GCTGGCAAACCGAATGAAGTATTAAAACTGGGCGAGACGCACGTTAGTGA
AGAACTATTTGACGAATATTTAAACGGGCTTCGACAGAGCCGATTCAGTA
ACGGTACGTACGATTTATTCAAACATAATTGTAACACATTCACGAACGAA
TTGAGTCAATTTCTTACGGGTGAAGGTATTCCTCAGGATATTCTCTCTCT
TCCGGACGAAATTCTTCGCAGCGCTTCATCTTGGCTTGGTCATGTTCATT
CGTTCAGAGGTGTTTCACCAGATTTTGAAACTTTAAATAATGATATAGAT
GCAGTAAGAATCAGATTTTTCTTGACAATCGTCAGCGATTCCACGGAATA
AGCTTGTATCTTTTTAATGGACAAAGGTCAGCTGTATTGGATCAAAAGAG
AAATAAAATCAAAGAGAAAGTAGAGCGATTGGAACGCAGACGAAAAAAAA
AGAATAAACACGAGAAGAACAATAGCGAATACGATTACTTTAATGATCTA
GAGAGGCTCAGCCCAGAACATTCGCAAAGTACAGTAAATTCGAGTAAATC
G
back to top