DN617513

Overview
NameDN617513
Unique NameDN617513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:50..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.250e-69
Identity = 117/153 (76.47%), Postives = 127/153 (83.01%), Query Frame = 2
Query:   95 RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            +GT GD  GGWQ GHATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYEMKC +DP+WCL  +I VTATNFCPPN  LSNDNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NGHSYFN
Sbjct:   21 QGTHGD-DGGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFN 172          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.510e-66
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 2
Query:  113 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            YGGGW + HATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+E++CEND KWCLPGSI+VTATNFCPPN AL+N+NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NGHSYFN
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFN 168          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 2.847e-65
Identity = 107/158 (67.72%), Postives = 127/158 (80.38%), Query Frame = 2
Query:   80 LNFCFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            LNFC      D  GGW+ GHATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++CE+DP+WC+PGSIIV+ATNFCPPN AL+NDNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG+ YF+
Sbjct:   17 LNFCLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFD 174          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 5.370e-64
Identity = 110/158 (69.62%), Postives = 122/158 (77.22%), Query Frame = 2
Query:   86 FCF--RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            FCF  R    DYG  WQS HATFY              YGNLYS GYGTNTAALST LFN+G +CGSCYE++C+ND +WCLPGS+ VTATN CPPN AL ND+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NGHSYFN
Sbjct:   15 FCFLARRAAADYGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFN 171          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 9.160e-64
Identity = 104/149 (69.80%), Postives = 123/149 (82.55%), Query Frame = 2
Query:  107 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            G  GGGW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C+ND KWCLPGSI+VTATNFCPPN AL N+ GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NGHSYFN
Sbjct:   21 GYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFN 169          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 7.754e-63
Identity = 107/145 (73.79%), Postives = 117/145 (80.69%), Query Frame = 2
Query:  119 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFN
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFN 166          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 7.754e-63
Identity = 107/145 (73.79%), Postives = 117/145 (80.69%), Query Frame = 2
Query:  119 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNGHSYFN
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFN 166          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.026e-62
Identity = 103/148 (69.59%), Postives = 120/148 (81.08%), Query Frame = 2
Query:  116 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            GG WQ+ HATFY              YGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC NDP+WC  GS  I++TATNFCPPNLA  +DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NGH YFN
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFN 175          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.026e-62
Identity = 103/159 (64.78%), Postives = 124/159 (77.99%), Query Frame = 2
Query:   86 FCFRG---TFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            FCF     +   Y  GW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E+KC++D  WCLPG+IIVTATNFCPPN AL N+ GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NGHSYFN
Sbjct:   14 FCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFN 172          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.144e-60
Identity = 102/148 (68.92%), Postives = 116/148 (78.38%), Query Frame = 2
Query:  116 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            GG WQ+ HATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+E+KC NDPKWC PG  S+ VTATNFCPPNLA  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFN
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFN 178          
The following BLAST results are available for this feature:
BLAST of DN617513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXPA8_ARATH3.250e-6976.47Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP10_ARATH1.510e-6673.47Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA2_ARATH2.847e-6567.72Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA2_ORYSJ5.370e-6469.62Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ARATH9.160e-6469.80Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA4_ORYSJ7.754e-6373.79Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI7.754e-6373.79Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA4_ARATH5.026e-6269.59Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP15_ARATH5.026e-6264.78Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP16_ARATH6.144e-6068.92Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617513 ID=DN617513; Name=DN617513; organism=Citrus sinensis; type=EST; length=553bp
ACATAAACATAAGCAGCCAGCAGTAGCAGCCATGACCAATATTGCAGCAT
CATCTAGTGTTGCTCTCCTTTTGTTTGTGCTCAATTTTTGCTTTCGTGGC
ACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGCCATGCAACTTTCTA
TGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGCTTGTGGGTATGGCA
ATTTGTACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGTACCGCT
CTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAAATGTGA
AAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCGCCACCA
ACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGTTGGTGC
AATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAAT
TGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGT
GTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCATACTTC
AAC
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