DN617498

Overview
NameDN617498
Unique NameDN617498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12382 contig Csv1_Contig12382:971..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.657e-56
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            LWFC+YKYNDENTVSFVTLNKV GFLQRMDLARKYAFGKML+IG+EPP+KVKGLWLFRG EIP FVM+ECYDMELY+W K D+SDE QKERVNQ+IED EPFEGEALLDAKCFK
Sbjct:  309 LWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.826e-56
Identity = 100/114 (87.72%), Postives = 106/114 (92.98%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            LWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFGKML+IG+EPP+KVKGLWLFRGPEIPKFVMDE YDMELY+W K DISDE QKERV+ MIED EPFEGEALLDAKCFK
Sbjct:  305 LWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 6.295e-56
Identity = 99/114 (86.84%), Postives = 106/114 (92.98%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            LWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFGKML+IG+EPP+KVKGLWLFRGPEIPKFVMDE YDMELY+W K DISDE QKERV+ MIED EPFEGE+LLDAKCFK
Sbjct:  305 LWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.081e-55
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            LWFCDYKYNDEN VSFVTLNKV GFLQRMDLARKY+FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DISDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  300 LWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.081e-55
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            LWFCDYKYNDEN VSFVTLNKV GFLQRMDLARKY+FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DISDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  301 LWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.645e-54
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            LWFCDYKYNDENTVSFVT+NKV GFLQRMDL RKYAFGKML+IG+ PP+KVKGLWLFRG +IPKFVMDE YDMELY+W K D+SDE QKERVN MIED EPFEGE LLDAKCFK
Sbjct:  303 LWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 44/114 (38.60%), Postives = 72/114 (63.16%), Query Frame = -3
Query:  185 WFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKK-ADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 523
            ++C YKYN++N + F+T N + G+ QRM+  RKYAFG  LIIG E  + +  LW+FRG  +P  ++++  D EL+DW++ AD++   Q+ER+   +    P     +L+ + FK
Sbjct:  301 FWCRYKYNEDNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEVADVA--AQRERITDYLSWEGPTIPRPVLEGRVFK 411          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  245 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQ 526
            +WF +YKYN+E +  F++ N ++G  QR+D  RK AF  + + G +    + G+W++RG ++      D   D E+YDWKK D   EE K+ V Q
Sbjct:  316 IWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQ 410          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = -3
Query:  212 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 526
            +W+ +Y++ +E T+SF++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+  F + E +  D E Y W+K D+  EE K     M++++  +EGE
Sbjct:  326 IWYAEYRFPEELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSEDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.328e-13
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D S EE +  V +       F+  G+A    K FK
Sbjct:  321 LWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 437          
The following BLAST results are available for this feature:
BLAST of DN617498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_PRUAV1.657e-5686.84Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ2.826e-5687.72Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ6.295e-5686.84Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH4.081e-5586.84Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH4.081e-5586.84Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G3_ORYSJ2.645e-5484.21Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G_TRYCR1.516e-1738.60Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
EF1G_DROME2.676e-1437.89Elongation factor 1-gamma OS=Drosophila melanogast... [more]
EF1G_CARAU2.676e-1434.58Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_RABIT1.328e-1333.33Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617498 ID=DN617498; Name=DN617498; organism=Citrus sinensis; type=EST; length=528bp
TTTTTTTTTTTTTTTTTAAAAAGATGTCCAAATCATCCTCAAAATTGCGA
CAAAATTATAAGTTAATACTATAACACAAAATACTAGACTTCGATCTTTC
TGAATTCGAAACACAAACAAACTCTACCAATAACCAAAGACAAACATGAA
CATCTTAAAACTAGAAAAAAGATTAAGCTCATCACTTGAAGCACTTAGCA
TCCAAAAGAGCTTCACCCTCAAAAGGCTCGTGATCCTCGATCATCTGGTT
CACACGTTCCTTTTGCTCTTCGTCTGAGATGTCAGCCTTCTTCCAGTCAT
ACAATTCCATGTCATAGCACTCATCCATGACGAATTTAGGAATTTCTGGG
CCACGGAAGAGCCACAACCCCTTGACTTTGTATGGAGGCTCGTTGCCGAT
AATTAACATCTTTCCAAACGCATACTTGCGAGCCAGATCCATCCTCTGAA
GAAACCCACTAACCTTGTTCAAGGTCACGAATGACACAGTATTCTCGTCA
TTGTATTTGTAATCACAGAACCAAAGTG
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