DN617497

Overview
NameDN617497
Unique NameDN617497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1381 contig Csv1_Contig1381:99..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 6.064e-66
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 3
Query:  129 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNISEPPNQQASQTSVKMPTQQSSSISSPWAVDDFLQFSDFESSGK-KEQLEFGELEWI 647
            MKIQCDVCEKAPAT+ICCADEAALCAKCDVEVHAANKLASKHQRL L  LS K PPCDIC EKAAFIFCVEDRAL C+DCDE  H+P + SANHQRFLATGIRVALSS SC+++ E+N  +P NQQ+     K PTQQ ++ S  WA D+F  +SD + S K KEQL+ GEL+W+
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHFDPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLDLGELDWL 172          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.346e-64
Identity = 125/181 (69.06%), Postives = 141/181 (77.90%), Query Frame = 3
Query:  129 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNISEPPN--QQASQTSVKMPTQQ----SSSISSPWAVDDFLQFSDFESSGKKEQLEF--GELEW 644
            MKIQCDVCEKAPATVICCADEAALC +CD+E+HAANKLASKHQRL L  LS K P CDICQEKAAFIFCVEDRAL C+DCDE IH   S SANHQRFLATGI+VAL+S+ CSK+ E+N  EP N  Q+A+Q   K  +QQ    SS+   PWAVDDF  FSD ES+ KK QL+   GEL+W
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDW 181          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.588e-34
Identity = 79/201 (39.30%), Postives = 106/201 (52.74%), Query Frame = 3
Query:  129 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS--------SCSKDAERNISEPPNQQA-------------------------------SQTSVKMPTQQSSSISS---PWAVDDFLQFSDFESS 605
            MKIQC+VCE A ATV+CCADEAALC  CD ++HAANKLA KHQR+ L   ++ +P CDICQE + F FC++DRAL C+ CD  IH+     + HQRFL TGI+V L S        S   + ++ +   P  Q+                                QTS K+P   S S +     W +++    +DF+ S
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPTNDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTKVNDQTSTKLPLVSSGSTTGSIPQWQIEEIFGLTDFDQS 201          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.849e-31
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  129 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-CDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQ---ASQTSVKMPTQQSSSISSP 560
            MKI+CDVC+K  A+V C ADEA+LC  CD +VH ANKLASKH R  LL    SN   P CDICQ+K A +FC +DRA+ CKDCD  IH+    +  H RFL TG++++ +SS  K   ++ S   + Q      +S+  P      +S+P
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAP 150          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 57/173 (32.95%), Postives = 85/173 (49.13%), Query Frame = 3
Query:  141 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR--FLATGIRVALSSSCSKDAERNISEPPNQ-----------QASQTSVKMPTQ-QSSSISSPWAV-DDFLQFSDFESSGKK 614
            CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   A  FC  D A  C  CD  IHS   L+  HQR   L        S++ +   E  +++P N+           +A   S  +P   ++S  ++ +++ D+FL   D+ SS K+
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQ 175          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  141 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 479
            CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C++  A + C  D A  C  CD  IHS   LS  H+R   T    A+  + S  +  N
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVN 111          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 53/169 (31.36%), Postives = 75/169 (44.38%), Query Frame = 3
Query:  141 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSSISSPWAVDDFLQFSDFESSGKKEQLEFGELEWI 647
            CD C+ A A + C  D A LC  CD +VHAANKLAS+H R+ +         C++C++  A + C  D A  C  CD  IHS   L+  H+R   T    ++SS  S                 T+V               +DD   FSD + +G +E+ E     W+
Sbjct:    6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGS--------------VKHTAVNF-------------LDD-CYFSDIDGNGSREEEEEEAASWL 137          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 44/110 (40.00%), Postives = 54/110 (49.09%), Query Frame = 3
Query:  141 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDA 470
            CD C  A  TV C AD A LC  CD  VHAAN++AS+H+R+ +         C  C+   A   C  D A  C  CD  IHS   L+  HQR     I    ++SCS  A
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR---VPILPLSANSCSSMA 113          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 3
Query:  141 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 416
            CD C     TV C AD A LC  CD +VH+AN++AS+H+R+ +         C+ C+   A   C  D A  C  CD  +HS   L+  HQR
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102          
BLAST of DN617497 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  141 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGS 395
            CD C+ + A V C AD A LC  CD +VH AN+L +KH R LL         CD C E  + +FC  +R++ C++CD   H+  S
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL---------CDSCNESPSSLFCETERSVLCQNCDWQHHTASS 88          
The following BLAST results are available for this feature:
BLAST of DN617497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
STH_ARATH6.064e-6670.29Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STO_ARATH4.346e-6469.06Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STHY_ARATH3.588e-3439.30Probable salt tolerance-like protein At1g78600 OS=... [more]
STHX_ARATH4.849e-3146.00Probable salt tolerance-like protein At1g75540 OS=... [more]
COL1_ARATH4.258e-1932.95Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL3_ARATH1.160e-1638.05Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH3.374e-1631.36Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL2_ARATH3.730e-1540.00Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH2.418e-1439.13Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL13_ARATH5.956e-1341.18Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617497 ID=DN617497; Name=DN617497; organism=Citrus sinensis; type=EST; length=648bp
ATTTTCTTTAAAGGGCTATTGGGATTTTCTCTTCAAAAGAAGTTTCAAGG
ATCAAAATTTAATCTTGAGTTTCAATAGATTGGTTATTTTTCCTTTTATA
TGTATAAATATATATAAAGAGTGAAAAGATGAAGATACAGTGTGATGTGT
GTGAGAAAGCTCCAGCAACAGTGATTTGCTGTGCGGATGAGGCTGCTTTG
TGTGCTAAATGTGATGTTGAAGTTCACGCAGCAAACAAGCTAGCTAGCAA
GCACCAGAGGCTTCTTCTTCAGTGTCTTTCCAATAAGCTTCCTCCATGTG
ATATATGCCAAGAAAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCA
CTCTTCTGTAAGGACTGTGATGAACCTATCCATTCACCTGGTAGTCTTTC
TGCTAACCATCAGAGGTTTTTGGCCACTGGAATCCGAGTAGCCTTAAGCT
CTAGTTGTTCCAAAGATGCTGAAAGGAATATATCTGAGCCACCAAATCAG
CAAGCATCACAAACTTCAGTAAAAATGCCTACACAGCAATCTTCGAGCAT
CTCATCTCCTTGGGCCGTGGACGACTTCTTACAATTCTCAGATTTTGAAT
CCTCTGGAAAGAAAGAGCAACTCGAGTTTGGAGAGCTTGAATGGATAG
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