DN617496

Overview
NameDN617496
Unique NameDN617496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617496_ssr302 microsatellite DN617496_ssr302:302..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5460 contig Csv1_Contig5460:471..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617496 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.023e-16
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = -1
Query:  277 KKEHLEFGELEWIADMGIFNDQLPQEALAAAEVPQLPVSQPNNLISSYRPTKFNMPYKKPRIEIP-DDDDEHFTVPDLG 510
            +KE L+ GEL+W+A+MG+F DQ  QEAL  AEVP+L  S   +  S  RP K N+P KK R+E   DD++EHF VPDLG
Sbjct:  160 EKEQLDLGELDWLAEMGLFGDQPDQEALPVAEVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVPDLG 238          
BLAST of DN617496 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.688e-16
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  277 KKEHLEFG--ELEWIADMGIFNDQLPQEALAAAEVPQLPVSQPNNLISSYRPTKFNMPYKKPRIE--IPDDDDEHFTVPDLG 510
            KK  L+ G  EL+W +DMG F DQ+  +AL AAEVP+L VS   + + SY+P K N+ +KKPR E    DDD+EHF VPDLG
Sbjct:  168 KKGQLDLGAGELDWFSDMGFFGDQINDKALPAAEVPELSVSHLGH-VHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG 248          
The following BLAST results are available for this feature:
BLAST of DN617496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STH_ARATH2.023e-1654.43Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STO_ARATH7.688e-1653.66Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01E14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617496 ID=DN617496; Name=DN617496; organism=Citrus sinensis; type=EST; length=510bp
CAAGTAGATGTGAATTATACAAGCTATAAGCATAGGGTAACACATCTCGA
CCTTTCAATGCCAAAAAGAACAAAACACTGCACATCCATGGCTGATAAAG
AAAAGTAAAATTGCTAAACAAGACCTTTGCTCAGCGTTGGGATTGATGAT
ACTCCTAAAAATGTATTATAACACATAACATGTGTCTAAATACATATTTA
TATGTACGTGTACATAGGAAAGTATGGGTAGTTCATCAACCTATGAATGA
CTGTAGATATTATTTCTTTATGTTTAACCAAGATCTGGGACAGTGAAATG
CTCATCATCATCATCTGGGATCTCAATCCTTGGCTTCTTGTATGGCATAT
TGAATTTTGTGGGCCTGTATGATGATATTAAGTTGTTGGGCTGCGACACC
GGGAGTTGAGGTACTTCAGCAGCTGCTAGAGCCTCCTGAGGAAGTTGGTC
GTTGAATATTCCCATGTCTGCTATCCATTCAAGCTCTCCAAACTCGAGAT
GCTCTTTCTT
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