DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:713..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            ++IN E +  + P  +L+NI RG  VD + L+ AL EG + GAGLDVFE EP+  EELF L+NVVL PH+GS T E R+ MA+LV  NL A
Sbjct:  220 YMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAREAMAELVARNLIA 310          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.284e-19
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+IN E +  + P  +L+NI RG  VD   L+ AL EG + GAGLDVFE EP+  EELF L+NVVL PH+GS T   R+ MA+LV  NL A
Sbjct:  220 HMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVVLAPHIGSATYGAREGMAELVARNLIA 310          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  304 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA--------HFLNKPLLT 603
            H+I  + +  + P  +LIN  RG  VD   L+ AL EG + GAGLDVFE EP+  EELF L+NVVL PH+GS T E R+ MA+LV  NL A        + +NK +LT
Sbjct:  220 HMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNLIAFAKGEIPPNLVNKDVLT 327          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.854e-18
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I    +  + P  +L+NI RG  VD   L+ AL EG + GAGLDVFE EP+  EELF L+NV+L PH+GS T   R+ MA+LV  NL A
Sbjct:  220 HMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVILAPHIGSATFGAREGMAELVARNLIA 310          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.422e-18
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+IN E +  +    +LINI RG  VD   L+ AL EG + GAGLDVFE EP+  EELF L+NVVL PH+GS +   R+ MA+LV  NL A
Sbjct:  220 HLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA 310          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.163e-18
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+IN E +  +    +LIN+ RG  +D + L+ AL EG + GAGLDV+E EP+  EELF L+NVVL PH+GS T   R+ MA LV  NL A
Sbjct:  221 HMINEERLKMMKRTAILINVARGKVIDTKALIKALKEGWIAGAGLDVYEEEPYYNEELFSLDNVVLTPHIGSATFGAREGMAKLVAENLIA 311          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            ++IN E +  +    +L+NI RG  VD + L+ AL EG + GAGLDV+E EP+  EELF L+NVVL PH+GS T   R+ MA+LV  NL A
Sbjct:  220 YMINEERLRLMKKTAILVNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGAREGMAELVARNLIA 310          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G L  AGLDVFE EP  V  EL  L NVV +PH+GS T ETR  MA   + NL A
Sbjct:  216 HLIGREQLAKMKRSAILINAGRGPVVDEQALIAALKDGTLHAAGLDVFEQEPLPVSSELLALRNVVALPHIGSATHETRYGMAKDAVDNLIA 307          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I RE +  + P  +LINIGRG  VDE  L  ALV+G + GAGLDVF  EP  V   L  L NVV +PH+GS T ETR  MA   + NL A
Sbjct:  212 HLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQGAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAACAVDNLIA 303          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = -3
Query:  316 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNK 603
            H+I RE +  + P  +LIN GRGP VDE+ L++AL +  +  AGLDVFE EP  V  EL  L NVV +PH+GS T ETR  MA   + NL A    K
Sbjct:  215 HMIGREQLAKMKPSAILINAGRGPVVDEQALIAALKDKTIHAAGLDVFEQEPLPVDSELLTLPNVVALPHIGSATHETRYGMARDAVDNLIAALAGK 311          
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GYAR_PYRFU1.981e-2053.85Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_THEON1.284e-1953.85Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_THELI4.880e-1948.15Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_THEGJ1.854e-1850.55Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_PYRHO2.422e-1852.75Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_PYRAB3.163e-1850.55Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_PYRKO7.046e-1850.55Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GHRB_ERWT91.017e-1652.17Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_PECCP2.960e-1652.17Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_ENTAG2.960e-1649.48Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
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