DN617482

Overview
NameDN617482
Unique NameDN617482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617482_ssr12 microsatellite DN617482_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:32..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.547e-62
Identity = 113/119 (94.96%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ME+FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAN+DYEKIVRDTCRSIGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPE++G
Sbjct:    1 MESFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANIDYEKIVRDTCRSIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEDVG 119
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.639e-62
Identity = 114/119 (95.80%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCT+TNMVMVFGEITTKANVDYE+IVRDTCRSIGFTS DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTRTNMVMVFGEITTKANVDYEQIVRDTCRSIGFTSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIG 119
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.639e-62
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQVSDA+LDACL QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIG 119
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.639e-62
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQVSDA+LDACL QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKKPEEIG 119
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.501e-62
Identity = 115/119 (96.64%), Postives = 116/119 (97.48%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGFTS DVGLDAD CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPESKVACETCTKTNMVMVFGEITTKAEVDYEKIVRDTCRSIGFTSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 119
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 4.501e-62
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ++TFLFTSESVNEGHPDKLCDQVSDAVLDACLA+DPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVR+TCR+IGF SADVGLDADHCKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    4 LDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 4.501e-62
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ++TFLFTSESVNEGHPDKLCDQVSDAVLDACLA+DPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVR+TCR+IGF SADVGLDADHCKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    4 LDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 5.879e-62
Identity = 112/119 (94.12%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            M+TFLFTSESVNEGHPDKLCDQVSDA+LDACLAQDP+SKVACETC+KTNMVMVFGEITTKANVDYEKIVRDTCR IGFTSADVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTK+PEEIG
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQVSDAILDACLAQDPESKVACETCSKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFTSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIG 119
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 7.678e-62
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +ETFLFTSESVNEGHPDKLCDQ+SDAVLDACLA+DPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCR IGF S DVGLDADHCKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    4 VETFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122
[Close]
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.003e-61
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKA++DYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKADIDYEKIVRDTCRTIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 119
The following BLAST results are available for this feature:
BLAST of DN617482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_SUASA1.547e-6294.96S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK_LITCN2.639e-6295.80S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK2_TOBAC2.639e-6294.96S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK1_PETHY2.639e-6294.96S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK2_BETVU4.501e-6296.64S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK1_ORYSJ4.501e-6294.12S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI4.501e-6294.12S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK4_POPTR5.879e-6294.12S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK4_HORVU7.678e-6294.12S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK5_VITVI1.003e-6194.12S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617482 ID=DN617482; Name=DN617482; organism=Citrus sinensis; type=EST; length=527bp
CGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCTTTCTC
TCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAATTCCA
TTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGT
TAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAATCAGT
GAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGCAGTAC
TGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTGAAACA
TGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATTACAACCAAGGC
CAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGATTGGGT
TCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTCTTGTT
AATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGGCATCT
CACAAAGCGGCCTGAGGAGATTGGTGC
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