DN617470

Overview
NameDN617470
Unique NameDN617470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:106..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.079e-37
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVLVTNV G GDV SVSIKGS TGWQ MSRNWGQNWQSNSYL+GQSLSFQV  SDGRTVTSNNVVPA W
Sbjct:  159 GIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGW 240          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.546e-37
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVL+TNVGGAGDVHS  +KGS+TGWQAMSRNWGQNWQSNSYLNGQSLSF+VT SDG+T+ SNNV  A W
Sbjct:  157 GIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGW 238          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.049e-37
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVLVTNVGGAGDVHSV++KGS+T WQ MSRNWGQNWQSN+ LNGQ+LSF+VTASDGRTV SNN+ PA+W
Sbjct:  160 GIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASW 241          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQVTASDGRTVTSNNV    W
Sbjct:  154 GVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.299e-36
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            G+RFTVNGHSYFNLVLVTNV GAGDV SVSIKGS+TGWQ MSRNWGQNWQSN++L+GQSLSFQVTASDGRTVTSNNV    W
Sbjct:  154 GVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGW 235          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.002e-36
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVL++NVGGAGDVH+VSIKGSKT  WQAMSRNWGQNWQSNSY+N QSLSFQVT SDGRT+ SN+V P+NW
Sbjct:  160 GIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNW 242          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.002e-36
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVL+TNVGGAGDVHS +IKGS+T WQAMSRNWGQNWQSNSYLNGQ+LSF+VT SDGRTV S N  PA W
Sbjct:  156 GIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGW 237          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.395e-35
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVLVTNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF VT SD R+V S NV P  W
Sbjct:  161 GIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.379e-33
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+NGHSYFNLVL+TNV GAGDV SVSIKG+ T WQ+MSRNWGQNWQSN+ L+GQ+LSF+VT SDGRTV SNN  P NW
Sbjct:  159 GIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNW 240          
BLAST of DN617470 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.542e-32
Identity = 62/82 (75.61%), Postives = 73/82 (89.02%), Query Frame = -2
Query:  265 GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 510
            GIRFT+ GHSYFNLVLVTNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF+VTASDGRTVTS+NV P+ W
Sbjct:  156 GIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
The following BLAST results are available for this feature:
BLAST of DN617470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA2_ORYSJ2.079e-3787.80Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ARATH3.546e-3782.93Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH6.049e-3782.93Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ORYSJ2.299e-3685.37Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.299e-3685.37Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ARATH3.002e-3683.13Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP10_ARATH3.002e-3682.93Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA5_ARATH7.395e-3582.93Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP14_ARATH2.379e-3378.05Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP11_ORYSJ1.542e-3275.61Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617470 ID=DN617470; Name=DN617470; organism=Citrus sinensis; type=EST; length=511bp
ATTATACCTCGTTCATCTCAATTGGAGTAATAACTATATATAGAACACAA
TCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGCAA
CAAGACAGGCCACATCGGCCAGGCCTCAGCCTCACCTACCCCTATTCTCA
CCCTTTCTCCCTCACAAACACAATGCCAAATTCAATTAAATATACAATTT
CTGATTCACTTTTTTAAAATCTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTGCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCACTTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGACCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCT
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