DN617469

Overview
NameDN617469
Unique NameDN617469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8229 contig Csv1_Contig8229:5..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.427e-68
Identity = 133/158 (84.18%), Postives = 137/158 (86.71%), Query Frame = 2
Query:   50 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            MGQG  GGLNRQ                 FEPAAPPARVGRKQRKQKGPEAAARLPTVTP +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVD+DQLEPGC+ILM
Sbjct:    1 MGQGPSGGLNRQGDRKPDGGEKKEKK---FEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILM 155          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.427e-68
Identity = 133/158 (84.18%), Postives = 137/158 (86.71%), Query Frame = 2
Query:   50 MGQGTPGGLNRQXXXXXXXXXXXXXXXXXFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            MGQG  GGLNRQ                 FEPAAPPARVGRKQRKQKGPEAAARLPTVTP +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVD+DQLEPGC+ILM
Sbjct:    1 MGQGPSGGLNRQGDRKPDGGDKKEKK---FEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILM 155          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 7.562e-62
Identity = 119/160 (74.38%), Postives = 132/160 (82.50%), Query Frame = 2
Query:   50 MGQGTPGGLNRQXXXXXXXXXXXXXXXXX--FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            MGQGTPGG+ +Q                   FEP A P+RVGRKQRKQKGPEAAARLP V PLSKC+LRLLKLER+KDYLLMEEEFV  QERL+P E+K EEDRSKVDDLRG+PMSVG+LEE+IDE+HAIVSSSVGPEYYVGILSFVD+DQLEPGC+ILM
Sbjct:    1 MGQGTPGGMGKQGGAPGDRKPGGDGDKKDRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILM 160          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 1.747e-50
Identity = 93/129 (72.09%), Postives = 117/129 (90.70%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            +EP  P  RVG+K+R+ KGP+AA +LP VTP ++C+L+LLKLERIKDYL+ME+EF+ NQERLKPQ+EK EE+RSKVDDLRG+PMSVGNLEE+ID+NHAIVS+SVG E+YV ILSFVD+DQLEPGC++L+
Sbjct:   24 YEPPIP-TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLL 151          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 9.588e-49
Identity = 91/129 (70.54%), Postives = 115/129 (89.15%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVD+D LEPGC++L+
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLL 152          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 9.588e-49
Identity = 91/129 (70.54%), Postives = 115/129 (89.15%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVD+D LEPGC++L+
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLL 152          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 9.588e-49
Identity = 91/129 (70.54%), Postives = 115/129 (89.15%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVD+D LEPGC++L+
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLL 152          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.215e-48
Identity = 90/129 (69.77%), Postives = 114/129 (88.37%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            +EP  P  RVG+K++K KGP+AA++ P VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVD+D LEPGC++L+
Sbjct:   25 YEPPVP-TRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLL 152          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.410e-46
Identity = 81/123 (65.85%), Postives = 113/123 (91.87%), Query Frame = 2
Query:  155 PARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            P+R+G+K++  KGP+AA++LP VTP ++C+L+LLK ERIKDYLLME+EF+ NQERLKPQEE+ EE+R+KVD+LRG+PM+VG+LEE+ID+ HAIVS++VG E+YV I+SFVD++QLEPGC++L+
Sbjct:   33 PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLL 155          
BLAST of DN617469 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.286e-44
Identity = 79/129 (61.24%), Postives = 111/129 (86.05%), Query Frame = 2
Query:  137 FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDRDQLEPGCAILM 523
            +EP  P     RK++ Q GP+A+A+LPTV P ++C+LRLLK++RI D+LLMEEE+V NQERLKPQ+E+ +E+R++VD++RG+PMSVG LEE+ID++HAIVS++ GPEYYV I+SFVD+D LEPGC++L+
Sbjct:   31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDMLEPGCSVLL 158          
The following BLAST results are available for this feature:
BLAST of DN617469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PRS4B_ARATH2.427e-6884.1826S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH2.427e-6884.1826S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4_ORYSJ7.562e-6274.3826S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4_DROME1.747e-5072.0926S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_RAT9.588e-4970.5426S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE9.588e-4970.5426S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN9.588e-4970.5426S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK6.215e-4869.7726S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_CAEEL3.410e-4665.85Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_SCHPO9.286e-4461.2426S protease regulatory subunit 4 homolog OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617469 ID=DN617469; Name=DN617469; organism=Citrus sinensis; type=EST; length=524bp
CTCGCTTTTATTCTCTCACTTAATCGAATTCGAAATCTAGTGTGAAGCCA
TGGGTCAGGGAACACCGGGAGGTCTGAACCGGCAAGGTCCAGGAGGTGAC
CGCAAGGGTGATGGAGCGGATAAGAAAGATAAAAAATTCGAGCCTGCAGC
TCCTCCGGCCCGTGTGGGCCGCAAGCAACGAAAGCAGAAAGGACCAGAAG
CGGCGGCACGCCTTCCGACCGTTACGCCGCTGAGTAAGTGCAAGCTGAGG
CTTTTAAAGCTTGAGAGGATAAAAGATTATCTCTTGATGGAAGAGGAGTT
TGTTACGAATCAGGAGAGATTGAAGCCGCAGGAAGAGAAGGCGGAGGAAG
ATCGGTCAAAGGTTGACGATCTGAGAGGTTCGCCGATGAGCGTTGGTAAT
TTGGAGGAGTTGATTGATGAGAATCACGCCATTGTTTCGTCGTCGGTGGG
GCCCGAGTATTACGTCGGGATTTTGTCCTTTGTTGATAGGGATCAGCTGG
AGCCTGGCTGTGCTATTTTGATGC
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