DN617454

Overview
NameDN617454
Unique NameDN617454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            MFESIDVT PRD KQRI+ EQHC+ARD+VN+IACEG +RVERHELLGKWRSRF MAGFTPY LSPLV + ++ +L++Y   YR+EE DGALYLGW +R +  S AWK
Sbjct:  384 MFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.625e-37
Identity = 68/107 (63.55%), Postives = 87/107 (81.31%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            MFESIDV  PR+ K+RI+ EQHC+ARD+VN+IACEG ER+ERHELLGKW+SRF MAGF PY LS +++  +R +L+DY + Y +EE DGALYLGW +R + +S AWK
Sbjct:  307 MFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDGALYLGWMDRILVSSCAWK 413          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.682e-34
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +FESIDV   RD K+RI+ EQHC+AR++VN+IACEG+ER ERHE LGKWRSRF MAGF PY LS  V   ++ +L+ Y   Y +EE DGALYLGW+N+ + TS AW+
Sbjct:  491 VFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEERDGALYLGWKNQPLITSCAWR 597          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.746e-34
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  262 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAW 579
            MFESID   PRD+K+RIS EQHC+A+DIVN+IACEG +RVERHELLGKW+SR  MAGF PY LS  V + +R +L  Y   Y ++E DGA+ LGWR+R + ++SAW
Sbjct:  465 MFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  262 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAW 579
            +FESID+T PRDD++RI+ EQHC+AR+IVN+IACEG ER ER+E  GKW++R  MAGF P  LS LV   +R +L+ Y  NY++ E DGALYLGW++R +  SSAW
Sbjct:  438 IFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.405e-26
Identity = 50/108 (46.30%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLK-DYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +FES+D+T PR+ ++R++ E+ C+ARDIVN++ACEG ER+ER+E  GKWR+R MMAGF P  +S  VTN +++++K  Y + Y+++E  G L+  W  +++  +SAW+
Sbjct:  486 VFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = -3
Query:  439 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLG 579
            MFESID  RPRDDKQRISAEQHCVARDIVNMIACE  ERVERHE+LG
Sbjct:  236 MFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLG 282          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.601e-16
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++ +     + R+ +E + + R I+N++A EG +RVERHE   +WR R   AGF P  L          +L  Y     YRVEENDG L +GW+ R + T+SAWK
Sbjct:  438 LFDSLEDSYSLPSQDRVMSEVY-LGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK 545          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.025e-15
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 579
            +F+S++ +    DK      +  + + I N++ACEG +RVERHE L +WR+R   AGF P  L          +L  + S   YRVEEN+G+L LGW  R +  +SAWK
Sbjct:  465 LFDSLECSPNSQDKMM---SEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWK 570          
BLAST of DN617454 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.339e-15
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  259 MFESIDVTRPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 579
            + ES++ T P  +  R   E+  + R +VN +ACEGI+R+ER E+ GKWR R  MAGF    LS  +  +++         + V+E++G +  GW  RA+  +SAW+
Sbjct:  535 LLESVESTVPSTNSDRAKVEEG-IGRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRGNRVHPGFTVKEDNGGVCFGWMGRALTVASAWR 640          
The following BLAST results are available for this feature:
BLAST of DN617454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PAT1_ARATH9.206e-4170.09Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL21_ARATH1.625e-3763.55Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
SCL5_ARATH1.682e-3460.75Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
CIGR1_ORYSJ3.746e-3461.32Chitin-inducible gibberellin-responsive protein 1 ... [more]
CIGR2_ORYSJ2.428e-3359.43Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL1_ARATH6.405e-2646.30Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
SCL13_ARATH3.186e-1789.36Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
RGL2_ARATH4.601e-1639.45DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
GAIP_CUCMA1.025e-1539.45DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
SCL8_ARATH1.339e-1536.45Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617454 ID=DN617454; Name=DN617454; organism=Citrus sinensis; type=EST; length=581bp
AAATTTTTTTTCCTTCATTTAGTAACCAAGAAACACAAACGTTATAACAC
CGTAAGTTCAGTAAAATTCAGACCTGTCTGCTTATCATATTACAACGTGG
ACATTTACAGTAAAGTTGAGGTTCTATTAGATGATAATTGACAGCTACTC
TCCGTTCTATTAAGTTACAACTAACAAATATCACTATGACTCGTGCTCTA
AAAGCTACAACAAAAACTGTGGGGGTTAATTATACAGAGTTTCTATAATG
GTTTTTCACTTCCATGCAGAAGAGGTGGCCATAGCTCTGTTTCTCCAGCC
GAGATAAAGAGCCCCATCATTCTCTTCAACTCTATAGTTACTATCATAGT
CTTTCAATACATCCCTCACAGCATTTGTCACCAAAGGACTCAATCGATAT
GGGGTAAATCCTGCCATCATAAAACGTGATCTCCACTTACCAAGAAGTTC
ATGCCGTTCCACCCTTTCAATCCCCTCACAAGCTATCATGTTGACTATGT
CCCGGGCCACACAGTGCTGCTCTGCACTGATACGTTGCTTGTCATCCCTT
GGACGAGTAACATCAATGCTCTCAAACATAG
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