DN617453

Overview
NameDN617453
Unique NameDN617453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5725 contig Csv1_Contig5725:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617453 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.979e-20
Identity = 70/169 (41.42%), Postives = 92/169 (54.44%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHIS-----CVSGFDSSLEFPTALLRAKNLR-TFLSTVYSSSDRQLNESYCNKIVSSFKCL 490
            LP  L+QCFAYCA+FPKD  ++KE L+ LWMA GFL LS  N   EDVG+E +  L  RSFFQ+ E    GN    KIHDL+HDLA S+     +   +   NV +  H +S      VS +  SL      LR  NL  + L  + SS    L+  Y +   ++F+ L
Sbjct:  400 LPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEAKS-GNTY-FKIHDLIHDLATSLFSASASCGNIREINVKDYKHTVSIGFAAVVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSL 565          
BLAST of DN617453 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.891e-20
Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDAR-NVNERTHHISCV-SGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQ--LNESYCNKIVSSFKCLRTLNL 505
            LP+ LK+CFAYC++FPK +   K+++VLLWMA+GFL  +  ++  E++G+EYF  L SRS  Q  +        R  +HD +++LA+  +G   +K +   +  V+ERT ++S +   +   +EF  AL   K LRTFL    ++S R   L++    K++ +   LR L+L
Sbjct:  422 LPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK-------TRYIMHDFINELAQFASGEFSSKFEDGCKLQVSERTRYLSYLRDNYAEPMEF-EALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSL 585          
BLAST of DN617453 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.618e-19
Identity = 71/171 (41.52%), Postives = 90/171 (52.63%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSS---FKCLRTLNL 505
            LP  LKQCFAYCA+FPKD  + KE+L+ LWMA GFL LS  N   EDVG E +  L  RSFFQ+ E  +       K+HDL+HDLA S+     +   +   N +  TH +S   GF   + F T       L  F+S    +    L +S  NK+ SS      LR LNL
Sbjct:  399 LPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFL-LSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF--KMHDLIHDLATSLFSANTSSSNIREINKHSYTHMMSI--GFAEVVFFYT----LPPLEKFISLRVLN----LGDSTFNKLPSSIGDLVHLRYLNL 556          
BLAST of DN617453 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.642e-18
Identity = 58/139 (41.73%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHIS-----CVSGFDSSLEFPTALLRAKNLR 403
            LP  L+QCF YCA+FPKD  + KE L+  WMA GFL LS  N   EDVG+E +  L  RSFFQ+ E +        K+HDL+HDLA S+     +   +   N N   + +S      VS +  SL      LR  NLR
Sbjct:  398 LPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF--KMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLR 533          
BLAST of DN617453 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.756e-18
Identity = 61/172 (35.47%), Postives = 99/172 (57.56%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLD-ARNVNERTHHIS-CVSGFDSSLEFPTALLRAKNLRTFL--STVYSSSDRQLNESYCNKIVSSFKCLRTLNL 505
            LP  LK+CFA C++FPK ++  +E+LVLLWMA   L     ++  ED+G++Y   L+++SFFQ  +      +    +HDLM+DLA++V+G  C +++ D    +   T H S   S  D+S+ F  ++  A+ LRT L  ++  S    QL E   N ++++   LR L+L
Sbjct:  414 LPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDI----TMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPEIPSTTRHFSFSRSQCDASVAF-RSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSL 580          
BLAST of DN617453 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.384e-17
Identity = 63/168 (37.50%), Postives = 82/168 (48.81%), Query Frame = 2
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSLEFPTALLRAKNLRTFLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNL 505
            LP  L+QCFAYCA+FPKD  I KE L+ LWMA  FL LS  N   EDVG+E +  L  RSFFQ+ E          K+HDL+HDLA S+     +   +   NV +           D  + F        N +  +S  +S    ++  SY   +   F  LR LNL
Sbjct:  398 LPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFL-LSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF--KMHDLIHDLATSMFSASASSRSIRQINVKD-----------DEDMMFIVT-----NYKDMMSIGFS----EVVSSYSPSLFKRFVSLRVLNL 542          
The following BLAST results are available for this feature:
BLAST of DN617453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RGA4_SOLBU2.979e-2041.42Putative disease resistance protein RGA4 OS=Solanu... [more]
R13L1_ARATH3.891e-2036.05Putative disease resistance RPP13-like protein 1 O... [more]
RGA2_SOLBU5.618e-1941.52Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA1_SOLBU3.642e-1841.73Putative disease resistance protein RGA1 OS=Solanu... [more]
DRL21_ARATH4.756e-1835.47Putative disease resistance protein At3g14460 OS=A... [more]
RGA3_SOLBU1.384e-1737.50Putative disease resistance protein RGA3 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01D16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617453 ID=DN617453; Name=DN617453; organism=Citrus sinensis; type=EST; length=507bp
TCTGCCATCACCATTGAAACAGTGCTTTGCTTACTGTGCATTGTTTCCCA
AAGATTATCTAATAGTGAAGGAGCAACTGGTTTTACTTTGGATGGCACAA
GGGTTTCTTGGGCTATCAATCGACAACCAATGTCCAGAAGATGTTGGTCA
TGAGTATTTTATGAGTTTGCTTTCGAGGTCATTTTTTCAAGATGCAGAAT
ATGATGAATGGGGAAATATAATCAGATGCAAGATTCATGATCTCATGCAT
GATCTAGCAGAGTCAGTTGCTGGAACTGAGTGTGCCAAGGTGAAACTGGA
TGCAAGAAATGTTAATGAAAGGACTCATCACATTTCATGTGTTTCTGGTT
TCGATTCATCACTGGAATTTCCAACTGCATTGCTTAGAGCTAAGAATCTA
AGAACCTTTCTTTCGACAGTTTATTCTTCATCTGACAGGCAACTAAATGA
GTCCTACTGTAACAAAATCGTGTCTAGTTTTAAGTGTTTGCGAACGTTAA
ATTTGAG
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