DN617447

Overview
NameDN617447
Unique NameDN617447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3665 contig Csv1_Contig3665:177..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617447 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = -2 
Query:  391 DIKEDVEGECSKFGKLIHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 612
            +IK+DV  EC+K G +IHI+V+K+SA G VY++  +  +A AA  ALHGRWFAGKMITA ++   TY   FPDS+
Sbjct:  439 EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 513
[Close]
BLAST of DN617447 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = -2 
Query:  391 DIKEDVEGECSKFGKLIHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 612
            +IK+DV  EC+K G +IHI+V+K+SA G VY++  +  +A AA  ALHGRWFAGKMITA ++   TY   FPDS+
Sbjct:  445 EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
[Close]
BLAST of DN617447 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = -2 
Query:  391 DIKEDVEGECSKFGKLIHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 612
            +IK+DV  EC+K G +IHI+V+K+SA G VY++  +  +A AA  ALHGRWFAGKMITA ++   TY   FPDS+
Sbjct:  445 EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
The following BLAST results are available for this feature:
BLAST of DN617447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RBM39_PONAB3.368e-1554.67RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE3.368e-1554.67RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN3.368e-1554.67RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617447 ID=DN617447; Name=DN617447; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTGGGCGACTAACACAGAATGATAAATTTTTTTGAACA
CACATAGCAAAAATGGTATAGTAATTACCTCGCAAATACAAAAAGATGAA
AGCAGTAACTAAATAATTTGTAGGTTTTGATGTACTTTTACATTCAAAAT
GGTCCATTTCAGTGGATTGCGCTTTATCCTATATTTGAATGGGAACATCG
ACGAAGTGGCTAAACTTTCCAGCAATATATCTGAAAGAGAAAAGCCATAT
CGCTCTCCTCTTTCCATTAGCACCGATCATTACCACTATAACAAAAGTTG
CCAAATCATTTCTGCAGAAAAGGATCATCTCATCTAAACATCGATAAATA
CAGTATCAGCACATAGTATGCTTACTGTTCCAAAGTCTTATATGCTGTCA
GGAAACTTAGCCTCGTATGTCTGTGGCACCATGAATGTTGCAGTGATCAT
CTTCCCAGCAAACCATCTTCCATGAAGAGCACGCTGTGCTGCAAAAGCAG
ACTGAGTATTTTCAAATCGCAAGTACACAAATCCAGCGCTATCCTTCTCA
ACAAAAATATGTATCAATTTTCCGAACTTCGAACATTCTCCTTCAACATC
TTCTTTGATATCCATA
back to top