DN617441

Overview
NameDN617441
Unique NameDN617441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617441_ssr37 microsatellite DN617441_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617441_ssr287 microsatellite DN617441_ssr287:287..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10123 contig Csv1_Contig10123:232..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.905e-79
Identity = 144/176 (81.82%), Postives = 158/176 (89.77%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 608
            V++LNPKVLKCEYAVRGEIV  AQ LQQ+LQT PGS  FDEILYCNIGNPQSLGQQP+TFFREVLALCDHP +L++ ET+ LFSAD+I RA QIL  IPGRATGAYSHSQGIKGLRD IAAGI +RDGFPA+ +DIF+TDGASP VHMMMQLLIR+E DGILCPIPQYPLYSASIA
Sbjct:    7 VENLNPKVLKCEYAVRGEIVIHAQHLQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPCLLEKEETKSLFSADAISRAKQILSTIPGRATGAYSHSQGIKGLRDAIAAGIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIA 182          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.045e-77
Identity = 143/176 (81.25%), Postives = 156/176 (88.64%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 608
            VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYCNIGNPQSLGQQP+TFFREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGAYSHSQGIKGLRD IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIA
Sbjct:    7 VDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIKGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA 182          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.417e-42
Identity = 86/178 (48.31%), Postives = 118/178 (66.29%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSET---QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 605
            ++SLN +V K  YAVRG +  +A  +Q +L  NP S+ F EI+Y NIGNPQ +GQ PITF R+VL+LC +P++LD +E    Q LF  D ++R+  +L +    + GAYS SQGI  +R  +A  I ARDGF  +P+DI+LT GAS A  ++M L+I    DG++ P PQYPLY A I
Sbjct:   30 LNSLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITFVRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLKE--SGSLGAYSASQGIPLVRRHVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQI 205          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.882e-40
Identity = 86/179 (48.04%), Postives = 124/179 (69.27%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIV----SIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 605
            +D++   V   +YAVRGE+V    +I+ +LQ++      +  F+EI+YCNIGNPQ L Q+P+T+FR+V++L + P +LD    + ++ AD I RA +IL  I    TGAYS+SQGI  +  ++A  IE RDG  +DP++IFLTDGAS  V  +++LLI+  +DGIL PIPQYPLYSA+I
Sbjct:   56 IDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQKPLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNSQGIGLVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSATI 233          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.927e-39
Identity = 89/176 (50.57%), Postives = 118/176 (67.05%), Query Frame = 3
Query:   90 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSIL----DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 602
            LN  V K EYAVRG I + A  L++EL+ NP    FD+I+  NIGNPQ L Q+P+TF R+VLA+ ++P IL    +   +  LFS D++ERA ++L+ I G + GAYSHSQG+ G+R T+A  I  RD G PA P DI+LT GAS A   ++ LL +    G+L PIPQYPLY+AS
Sbjct:   31 LNTGVTKAEYAVRGAIPTRADELKEELKKNPEVLPFDDIINANIGNPQQLDQKPLTFTRQVLAILEYPEILRVGHNELASLNLFSRDALERAERLLNDI-GGSIGAYSHSQGVPGIRQTVADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTAS 205          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.095e-38
Identity = 88/180 (48.89%), Postives = 121/180 (67.22%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            +D++NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITFFR+VLALC +P++L   +    F  D+  RA +IL    G + GAYS S GI+ +R+ +A  IE RD G PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALA 197          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 8.095e-38
Identity = 88/180 (48.89%), Postives = 121/180 (67.22%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            +D++NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITFFR+VLALC +P++L   +    F  D+  RA +IL    G + GAYS S GI+ +R+ +A  IE RD G PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAALA 197          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.355e-37
Identity = 82/181 (45.30%), Postives = 123/181 (67.96%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 608
            ++ +N  VLK +YAVRG I   A+ L+ +L+ +P S  FD I+  NIGNPQ L Q+P+T++R+VL+L  +P +L+++E Q     LF  D+I+RA  +++ I G + GAYS SQG++G+R ++A  I  RD G  + P DIFLT GAS AV+ ++ +  R    G+L PIPQYPLY+A++A
Sbjct:  113 LEDVNENVLKAKYAVRGAIPMRAEELKAQLEKDPQSLPFDRIINANIGNPQQLQQKPLTYYRQVLSLLQYPELLNQNEQQLVDSKLFKLDAIKRAKSLMEDI-GGSVGAYSSSQGVEGIRKSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTATLA 292          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.994e-36
Identity = 87/180 (48.33%), Postives = 119/180 (66.11%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            +DS+NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ PITF R+VLALC HP +L+  +    F  D+  RA +IL    G + GAYS S G++ +R+ +A  IE RD G PADPN+IFL+ GAS A+  +++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   23 LDSMNPYVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQIPITFPRQVLALCVHPDLLNSPD----FPDDAKRRAERILQACGGHSLGAYSISAGVQMIREDVARYIERRDGGIPADPNNIFLSTGASDAIVTVLKLLVTGEGRTRTGVLIPIPQYPLYSAALA 197          
BLAST of DN617441 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.604e-36
Identity = 85/180 (47.22%), Postives = 119/180 (66.11%), Query Frame = 3
Query:   81 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSE---NDGILCPIPQYPLYSASIA 608
            +D +NP+V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITF R+VLALC +P +L        F  D+ +RA +IL    G + GAYS S GI+ +R+ +A  IE RD G PADPN++FL+ GAS A+  +++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   23 LDGMNPRVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPN----FPDDAKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLA 197          
The following BLAST results are available for this feature:
BLAST of DN617441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALA2_PANMI1.905e-7981.82Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU1.045e-7781.25Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAT_SCHPO5.417e-4248.31Putative alanine aminotransferase OS=Schizosacchar... [more]
ALAM_DICDI3.882e-4048.04Probable alanine aminotransferase, mitochondrial O... [more]
ALAT_YEAST1.927e-3950.57Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAT1_RAT8.095e-3848.89Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT1_MOUSE8.095e-3848.89Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]
ALAM_YEAST2.355e-3745.30Probable alanine aminotransferase, mitochondrial O... [more]
ALAT1_BOVIN1.994e-3648.33Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAT1_HUMAN2.604e-3647.22Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617441 ID=DN617441; Name=DN617441; organism=Citrus sinensis; type=EST; length=609bp
CTCGTTTCTTGTCATCCACTTCTGTGATTGATTCCCCTTCTTCTTCTTCA
ATGGCTCCCACCTCTTCTCCTGCTATCACGGTCGATTCCCTTAACCCCAA
GGTTCTAAAATGCGAGTATGCTGTTCGTGGTGAGATTGTCTCCATTGCCC
AGCGGTTGCAACAAGAGTTACAAACTAACCCTGGCTCTCATTCCTTTGAT
GAGATACTGTACTGCAACATTGGAAATCCTCAGTCTCTTGGTCAGCAGCC
AATAACCTTTTTCCGAGAGGTTCTTGCATTATGTGACCATCCATCCATTT
TGGACAGAAGTGAAACACAAGGTTTGTTCAGTGCGGATTCTATAGAGCGA
GCTTGGCAGATACTGGATCAAATTCCTGGGCGAGCAACTGGGGCTTACAG
TCATAGTCAGGGTATCAAGGGACTGCGTGATACAATCGCTGCTGGAATTG
AGGCTCGTGATGGTTTTCCTGCTGATCCAAATGATATTTTCTTGACAGAT
GGTGCAAGTCCTGCTGTCCACATGATGATGCAGTTATTGATAAGATCAGA
GAACGATGGAATTCTCTGTCCTATTCCTCAGTACCCTTTATACTCTGCTT
CAATTGCTC
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