DN617440

Overview
NameDN617440
Unique NameDN617440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10123 contig Csv1_Contig10123:1256..1915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.611e-64
Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = -2
Query:  177 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 659
            REQIYK+ASVNLCSNI+GQILASLVM+PPKVGDESY +Y AE+DGIL SLARRAK LEDAFN+LEGI+CNKAEGAMYLFP+I LP             PDAFY  RLL +TGIV+VPGSGFGQVPGTWH RCTILPQEDKIPA++TR   FH+ FM ++R+
Sbjct:  322 REQIYKIASVNLCSNITGQILASLVMNPPKVGDESYAAYKAEKDGILQSLARRAKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.924e-63
Identity = 116/161 (72.05%), Postives = 133/161 (82.61%), Query Frame = -2
Query:  177 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 659
            REQIYK+ASVNLCSNI+GQILASLVM+PPK  DESY SY AE+DGIL+SLARRAK LE AFN LEGITCN+AEGAMY+FP+I LP             PDAFY  RLL +TGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+++R T FH+ FM ++R+
Sbjct:  322 REQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.347e-44
Identity = 80/160 (50.00%), Postives = 111/160 (69.38%), Query Frame = -2
Query:  180 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFR 659
            + +IYK+AS+ LC N+ GQ++  L++ PP  G++S++ Y  ERD I  SL +RA  L +A N+LEG+TCN +EGAMY FP+I+LP             PDA+YC +LL ATGI +VPGSGFGQ  GTWHFR T LP E+ I  +  R+ DFH++FM+K++
Sbjct:  375 KAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.796e-39
Identity = 73/157 (46.50%), Postives = 104/157 (66.24%), Query Frame = -2
Query:  183 QIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 653
            Q+ K+ SV LC  +SGQ    +V++PP  G+ES+E +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P          +  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ ++ DFH NF++K+
Sbjct:  366 QLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 522          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.458e-39
Identity = 71/159 (44.65%), Postives = 104/159 (65.41%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            ++Q+ K+ SV LC  + GQ+L  ++++PPK G+ SY+ + +E+  +L++LA +A+  E+  N   GI CN  +GAMY FPRI +P             PD F+C +LL  TGI +VPGSGFGQ  GT HFR TILP  DK+ +++ RL DFH+ FMD++
Sbjct:  381 KQQLTKLVSVRLCPPVPGQVLLDVIVNPPKPGEPSYKQFISEKQAVLNNLAEKARLTEEILNQAPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMDEY 539          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.884e-38
Identity = 73/157 (46.50%), Postives = 104/157 (66.24%), Query Frame = -2
Query:  183 QIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 653
            Q+ K+ SV LC  +SGQ    +V++PP+ G+ES+E +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P          K  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  DK+  ++ ++ DFH  F++++
Sbjct:  365 QLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQFSREKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.221e-37
Identity = 74/159 (46.54%), Postives = 101/159 (63.52%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            + Q+ K+ SV LC    GQ L  LV++PP+ G+ S++++  ER  +LS+LA +AK  E   N++ GI+CN  +GAMY FPRI LP             PD FYC +LL  TGI LVPGSGFGQ  GT+HFR TILP  DK+  ++ +L DFH+ F  ++
Sbjct:  390 KAQLTKLVSVRLCPPAPGQALMDLVVNPPQPGEPSHQTFMQERTAVLSALAEKAKLTEQILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQAPDMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 548          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.721e-37
Identity = 70/159 (44.03%), Postives = 101/159 (63.52%), Query Frame = -2
Query:  183 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 659
            ++Q+ K+ SV LC  + GQ L  ++++PPK G+ SY+ + AE+  +L +LA +A+  E+  N   GI CN  +GAMY FPRI +P             PD F+C +LL  TGI +VPGSGFGQ  GT HFR TILP  DK+ +++ RL DFH+ F +++
Sbjct:  365 KQQLTKLVSVRLCPPVPGQALLDVIVNPPKPGEPSYKQFMAEKQAVLGNLAEKARLTEEILNQSPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFTEEY 523          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.303e-36
Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = -2
Query:  177 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI--VTRLTDFHKNFMDKFRN 659
            R+ I K+AS++LC  ++GQ L  L++ PP  G+ES+ES  AER+ I   L  RA TL + FNSLEGI C K +GAMYLFP+I LP          +  PD FYC++LL +TGI  VPGSGFGQ PGT+H R T L      P +  + +   FHK F D++R+
Sbjct:  435 RQVILKLASISLCPVVTGQALVDLMVRPPVEGEESFESDQAERNSIHEKLITRAMTLYETFNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLELTPDEFYCKKLLESTGICTVPGSGFGQEPGTYHLRTTFL-----APGLEWIKKWESFHKEFFDQYRD 592          
BLAST of DN617440 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.950e-35
Identity = 72/155 (46.45%), Postives = 96/155 (61.94%), Query Frame = -2
Query:  195 REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF 659
            ++Q+ K+ SV LC  + GQ L  LV+SPP   D S+  + AE+  +L+ LA +AK  E  FN   GI+CN  +GAMY FPR+QLP             PD F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F
Sbjct:  337 QQQMLKLMSVRLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKF 491          
The following BLAST results are available for this feature:
BLAST of DN617440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALA2_PANMI2.611e-6473.29Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU4.924e-6372.05Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAM_DICDI1.347e-4450.00Probable alanine aminotransferase, mitochondrial O... [more]
ALAT2_HUMAN3.796e-3946.50Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT2_XENLA8.458e-3944.65Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
ALAT2_MOUSE1.884e-3846.50Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT2_DANRE1.221e-3746.54Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT2_XENTR2.721e-3744.03Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAM_YEAST2.303e-3647.85Probable alanine aminotransferase, mitochondrial O... [more]
ALAT1_HUMAN1.950e-3546.45Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617440 ID=DN617440; Name=DN617440; organism=Citrus sinensis; type=EST; length=660bp
TACCAAAAAACCTTTGTAATATTTCATCGTAACAAAGACCTATGACCGTC
AAAAAAACAAAGAGGAAAAAAAGTACGCTTTGTCCATTCACTCTGTAAAC
GTTTAACAATTGAAATGAATGGCTACACATTATTTTTCTGAACTCAGTCT
CATATTATTATGCAGAAGATCTTTCAATTACGGAATTTGTCCATGAAATT
TTTATGGAAGTCTGTCAGCCGGGTCACAATCGCTGGAATCTTGTCCTCTT
GAGGCAATATGGTGCACCTAAAATGCCAAGTGCCGGGGACCTGCCCAAAA
CCAGAACCAGGAACAAGAACAATTCCAGTGGCATTGAGAAGGCGGCGACA
ATAAAATGCATCTGGAACAGTTTTTTCAGCTTCAGCAGCTTTAATTGCCT
TTTCAGGCAGTTGAATACGAGGAAAGAGATACATTGCTCCTTCAGCCTTG
TTACATGTTATTCCTTCCAAACTGTTAAATGCATCTTCCAATGTCTTTGC
ACGCCTGGCTAAAGATGAGAGGATTCCATCCCTCTCAGCGCAATAGGACT
CATAAGATTCATCTCCAACCTTAGGTGGACTCATGACAAGGCTTGCCAGA
ATTTGGCCGGAGATATTAGAACAAAGATTCACAGATGCCACTTTGTATAT
TTGCTCCCTT
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