DN617438

Overview
NameDN617438
Unique NameDN617438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1249 contig Csv1_Contig1249:39..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_XENTR (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.598e-12
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ +E    Y    +   +  K + ++Y HT +    N      L+++YD +    K+NL+A+YFVHP  ++++   F  TF       V GL  K+  V  L  L+  V   ++EIP FV+D+D
Sbjct:  343 GVDNCGRTVMVVVGRNIPVLLIDMEKALLYFIHMM-DHVAAKEYVLVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFFTTF------TVSGLKDKVHQVESLHQLFSAVPPEQIEIPPFVLDYD 479          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_DANRE (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.598e-12
Identity = 43/145 (29.66%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ +E    Y    V   +  K + ++Y HT +    N      L+ +YD + A  K+NL+A YFVHP  ++++   F  TF       V GL  K+ ++  L  L+  V   +++IP FV+++D
Sbjct:  353 GVDLCGRTVMVVVGRNIPVMLIDMEKALLYFIH-VMDHITVKEYVMVYFHT-LTGEHNHLDTDFLKKLYDIVDAKFKKNLRAFYFVHPTFRSKVSTWFFTTF------SVSGLKDKVHHIENLQQLFTCVLPEQIDIPPFVLEYD 489          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD 480          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  345 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD 481          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_MACFA (Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  308 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD 444          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD 480          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_BOVIN (Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 41/145 (28.28%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD 480          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: GDAP2_XENLA (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  141 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 566
            G D  GR ++ ++G+  P  L+ +E    Y    +   +  K + ++Y HT +    N      L+++YD I    K+NL+A+YFVHP  ++++   F  TF       V GL  K+  V  L  L+  +   ++EIP FV+D+D
Sbjct:  343 GVDNCGRSVMVVVGRNIPVLLIDMEKALLYFIHMM-DHVTAKDYVLVYFHT-LTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFFTTF------TVSGLKDKVHQVESLHQLFTAIPPEQIEIPPFVLDYD 479          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: RHG01_MOUSE (Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  111 IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHDEDLE 578
            I R +I ++ G DK GRKI+     +  P+  L    L  YL +    +  +  +T+LY+H G+  S+N   +S LR  Y       K+N++A+Y VHP +  +  L  F  L     G    K+ YVN L  L EHV+  ++ IP  V+ +D+ L+
Sbjct:   67 IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL-KHTLDQYVESDYTLLYLHHGLT-SDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFG---RKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLK 218          
BLAST of DN617438 vs. ExPASy Swiss-Prot
Match: RHG01_HUMAN (Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  111 IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLAERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHDEDLE 578
            I R +I ++ G DK GRKI+     +  P+  L    L  YL +    +  +  +T+LY+H G+  S+N   +S LR  Y       K+N++A+Y VHP +  +  L  F  L     G    K+ YVN L  L EHV+  ++ IP  V+ +D+ L+
Sbjct:   67 IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL-KHTLDQYVESDYTLLYLHHGLT-SDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPLISFKFG---QKIFYVNYLSELSEHVKLEQLGIPRQVLKYDDFLK 218          
The following BLAST results are available for this feature:
BLAST of DN617438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GDAP2_XENTR1.598e-1230.34Ganglioside-induced differentiation-associated pro... [more]
GDAP2_DANRE1.598e-1229.66Ganglioside-induced differentiation-associated pro... [more]
GDAP2_RAT2.087e-1228.28Ganglioside-induced differentiation-associated-pro... [more]
GDAP2_MOUSE2.087e-1228.28Ganglioside-induced differentiation-associated pro... [more]
GDAP2_MACFA2.087e-1228.28Ganglioside-induced differentiation-associated pro... [more]
GDAP2_HUMAN2.087e-1228.28Ganglioside-induced differentiation-associated pro... [more]
GDAP2_BOVIN2.087e-1228.28Ganglioside-induced differentiation-associated pro... [more]
GDAP2_XENLA3.560e-1230.34Ganglioside-induced differentiation-associated pro... [more]
RHG01_MOUSE3.014e-1132.48Rho GTPase-activating protein 1 OS=Mus musculus GN... [more]
RHG01_HUMAN3.014e-1132.48Rho GTPase-activating protein 1 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01D09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617438 ID=DN617438; Name=DN617438; organism=Citrus sinensis; type=EST; length=624bp
AATCAATCAAAAAAAGGAACTGCGACTCATTTAATTAATTGATAGATATA
ACAAATAACTCAAGCATCATGTGTTCCCAAGTTGTATCAGAATCCGAACA
AGAAGAGCTCATCGACAGGCTTGAAATTTTCAAGATTCATGGACGTGACA
AACAAGGCCGCAAGATTCTTCGTATCATAGGAAAATTCTTTCCCGCGCGG
CTTCTGAGCGTTGAAGTGCTGAAAAGGTATTTGGCGGAGAGGGTGTATCC
AAGATTGGGGAAGAAGGCGTTCACGGTGTTGTACGTTCACACAGGAGTGC
AGAGAAGCGAGAACTTTGCTGGAATCTCGGCCCTTCGATCAATCTATGAT
GCTATTCCCGCCAATGTCAAGGAAAATCTCCAGGCCGTTTATTTTGTTCA
TCCTGGCTTGCAGGCTCGTCTCTTTCTTGCCACCTTTGGCCGCCTTTTCT
TCAACGGAGTCGGAGGGTTGTACGGGAAGCTGAGGTATGTGAACAGGCTT
GATTACTTGTGGGAGCACGTGAGGAGGCACGAGGTCGAGATTCCAGAATT
TGTGATGGATCACGATGAGGATTTGGAGTACCGTCCGATGATGGATTATG
GTTTGGAGAGTGATCACCGCAGAG
back to top