DN617437
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 386.341 bits (991), Expect = 6.005e-107 Identity = 188/198 (94.95%), Postives = 195/198 (98.48%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTISLL YLHE+RGI GPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE+LLVAGKFD+CVTSFEMAIKEK+ALRRFSWRYIIIDEAHRIKNENSLLSKTMRL++TNYRLLITGTPLQNNLHELW+LLNFLLPEIFSSAETFDEWFQISGE DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP Sbjct: 218 LGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 415
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 383.259 bits (983), Expect = 5.084e-106 Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNW+ EI+RFCP+LRAVKFLGNPEER HIRENLL GKFDVCVTSFEMAIKEK+ L+RFSWRYIIIDEAHRIKNENSLLSKTMR+YNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGE DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP Sbjct: 260 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFDVCVTSFEMAIKEKTTLKRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 457
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 2.018e-70 Identity = 123/198 (62.12%), Postives = 159/198 (80.30%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTISLLGY+ +R I GPHMV+ PKSTL NWM+E +R+ P LR+V +G+ E+R ++L+ G++DVCVTS+EM IKEKS ++F+WRY++IDEAHRIKNE S LS+ +R + T RLL+TGTPLQNNLHELWSLLNFLLP++F+SA+ FD WF + Q++V++LH VLRPFLLRR+K+DVEK LPP Sbjct: 209 LGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 406
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 4.495e-70 Identity = 122/198 (61.62%), Postives = 159/198 (80.30%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTISLLGY+ +R I GPHMV+ PKSTL NWM+E +++ P LR+V +G+ E+R ++L+ G++DVCVTS+EM IKEKS ++F+WRY++IDEAHRIKNE S LS+ +R + T RLL+TGTPLQNNLHELWSLLNFLLP++F+SA+ FD WF + Q++V++LH VLRPFLLRR+K+DVEK LPP Sbjct: 208 LGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 405
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2) HSP 1 Score: 257.684 bits (657), Expect = 3.221e-68 Identity = 119/198 (60.10%), Postives = 155/198 (78.28%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTI+LLGYL +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R + ++ G++DVCVTS+EM IKEKS ++F WRY++IDEAHRIKNE S LS+ +R + + RLL+TGTPLQNNLHELW+LLNFLLP++F+SA+ FD WF Q++V++LH VL+PFLLRR+K+DVEK LPP Sbjct: 212 LGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPP 409
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 4.207e-68 Identity = 119/198 (60.10%), Postives = 155/198 (78.28%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTI+LLGYL +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R + ++ G++DVCVTS+EM IKEKS ++F WRY++IDEAHRIKNE S LS+ +R + + RLL+TGTPLQNNLHELW+LLNFLLP++F+SA+ FD WF Q++V++LH VL+PFLLRR+K+DVEK LPP Sbjct: 216 LGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPP 413
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67 Identity = 118/198 (59.60%), Postives = 155/198 (78.28%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTISLLGYL F+ GPH+V+ PKSTL NW+NE +++CP LRAV +G+ + R ++L+ G++DVCVTS+EM I+EKS ++F+WRY++IDEAHRIKNE S LS+ +R + T RLLITGTPLQNNLHELW+LLNFLLP++F+S+E FDEWF + ++ +LH VL+PFLLRRLK++VEK L P Sbjct: 157 LGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKP 354
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2) HSP 1 Score: 246.128 bits (627), Expect = 9.700e-65 Identity = 113/198 (57.07%), Postives = 151/198 (76.26%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTIS++GY+ ++ PH+V+ PKSTL NW NE +++CP + AV +G+ R + ++++ KFDVC T++EM +K K+ L++ +WRYIIIDEAHRIKNE S LS+T+R N+ RLLITGTPLQNNLHELW+LLNFLLP+IF+S++ FD WF ++VQ+LHKVL+PFLLRR+KSDVEK L P Sbjct: 161 LGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLP 358
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 5.322e-63 Identity = 116/199 (58.29%), Postives = 150/199 (75.38%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF-QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTIS LGYL + I GP +++ PKSTL NW E ++ P + + G+ + R I N+++ +FDV +TS+EM I+EK+AL+R +W+YI+IDEAHRIKNE S LS+ +RL+ + RLLITGTPLQNNLHELW+LLNFLLP+IF +E FDEWF Q + E DQ+ V+QQLH VL PFLLRR+K+DVEK L P Sbjct: 213 LGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLLP 411
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 2.022e-62 Identity = 118/199 (59.30%), Postives = 148/199 (74.37%), Query Frame = 1 Query: 1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI-SGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594 LGKTLQTIS LGYL I GP +V+APKSTL NW+ EI R+ P + A G+ EER + + L+ FDV + S+E+ I+EKS L++ +W YIIIDEAHRIKNE S+LS+ +R + + RLLITGTPLQNNLHELW+LLNFLLP+IFS A+ FD+WF S E DQ ++V+QLH VL+PFLLRR+KSDVE L P Sbjct: 225 LGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLP 423 The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bpback to top |