DN617437

Overview
NameDN617437
Unique NameDN617437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 386.341 bits (991), Expect = 6.005e-107
Identity = 188/198 (94.95%), Postives = 195/198 (98.48%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTISLL YLHE+RGI GPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE+LLVAGKFD+CVTSFEMAIKEK+ALRRFSWRYIIIDEAHRIKNENSLLSKTMRL++TNYRLLITGTPLQNNLHELW+LLNFLLPEIFSSAETFDEWFQISGE DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP
Sbjct:  218 LGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 415          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 383.259 bits (983), Expect = 5.084e-106
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNW+ EI+RFCP+LRAVKFLGNPEER HIRENLL  GKFDVCVTSFEMAIKEK+ L+RFSWRYIIIDEAHRIKNENSLLSKTMR+YNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGE DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP
Sbjct:  260 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFDVCVTSFEMAIKEKTTLKRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 457          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.018e-70
Identity = 123/198 (62.12%), Postives = 159/198 (80.30%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTISLLGY+  +R I GPHMV+ PKSTL NWM+E +R+ P LR+V  +G+ E+R     ++L+ G++DVCVTS+EM IKEKS  ++F+WRY++IDEAHRIKNE S LS+ +R + T  RLL+TGTPLQNNLHELWSLLNFLLP++F+SA+ FD WF  +     Q++V++LH VLRPFLLRR+K+DVEK LPP
Sbjct:  209 LGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 406          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.495e-70
Identity = 122/198 (61.62%), Postives = 159/198 (80.30%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTISLLGY+  +R I GPHMV+ PKSTL NWM+E +++ P LR+V  +G+ E+R     ++L+ G++DVCVTS+EM IKEKS  ++F+WRY++IDEAHRIKNE S LS+ +R + T  RLL+TGTPLQNNLHELWSLLNFLLP++F+SA+ FD WF  +     Q++V++LH VLRPFLLRR+K+DVEK LPP
Sbjct:  208 LGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPP 405          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.221e-68
Identity = 119/198 (60.10%), Postives = 155/198 (78.28%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTI+LLGYL  +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R     + ++ G++DVCVTS+EM IKEKS  ++F WRY++IDEAHRIKNE S LS+ +R + +  RLL+TGTPLQNNLHELW+LLNFLLP++F+SA+ FD WF        Q++V++LH VL+PFLLRR+K+DVEK LPP
Sbjct:  212 LGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPP 409          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.207e-68
Identity = 119/198 (60.10%), Postives = 155/198 (78.28%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTI+LLGYL  +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R     + ++ G++DVCVTS+EM IKEKS  ++F WRY++IDEAHRIKNE S LS+ +R + +  RLL+TGTPLQNNLHELW+LLNFLLP++F+SA+ FD WF        Q++V++LH VL+PFLLRR+K+DVEK LPP
Sbjct:  216 LGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPP 413          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 118/198 (59.60%), Postives = 155/198 (78.28%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTISLLGYL  F+   GPH+V+ PKSTL NW+NE +++CP LRAV  +G+ + R     ++L+ G++DVCVTS+EM I+EKS  ++F+WRY++IDEAHRIKNE S LS+ +R + T  RLLITGTPLQNNLHELW+LLNFLLP++F+S+E FDEWF  +       ++ +LH VL+PFLLRRLK++VEK L P
Sbjct:  157 LGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKP 354          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 9.700e-65
Identity = 113/198 (57.07%), Postives = 151/198 (76.26%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTIS++GY+  ++    PH+V+ PKSTL NW NE +++CP + AV  +G+   R  +  ++++  KFDVC T++EM +K K+ L++ +WRYIIIDEAHRIKNE S LS+T+R  N+  RLLITGTPLQNNLHELW+LLNFLLP+IF+S++ FD WF         ++VQ+LHKVL+PFLLRR+KSDVEK L P
Sbjct:  161 LGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLP 358          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.322e-63
Identity = 116/199 (58.29%), Postives = 150/199 (75.38%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF-QISGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTIS LGYL   + I GP +++ PKSTL NW  E  ++ P +  +   G+ + R  I  N+++  +FDV +TS+EM I+EK+AL+R +W+YI+IDEAHRIKNE S LS+ +RL+ +  RLLITGTPLQNNLHELW+LLNFLLP+IF  +E FDEWF Q + E DQ+ V+QQLH VL PFLLRR+K+DVEK L P
Sbjct:  213 LGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLLP 411          
BLAST of DN617437 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.022e-62
Identity = 118/199 (59.30%), Postives = 148/199 (74.37%), Query Frame = 1
Query:    1 LGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQI-SGEXDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 594
            LGKTLQTIS LGYL     I GP +V+APKSTL NW+ EI R+ P + A    G+ EER  + +  L+   FDV + S+E+ I+EKS L++ +W YIIIDEAHRIKNE S+LS+ +R + +  RLLITGTPLQNNLHELW+LLNFLLP+IFS A+ FD+WF   S E DQ ++V+QLH VL+PFLLRR+KSDVE  L P
Sbjct:  225 LGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLP 423          
The following BLAST results are available for this feature:
BLAST of DN617437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ISW2_ARATH6.005e-10794.95Putative chromatin-remodeling complex ATPase chain... [more]
ISW2_ORYSJ5.084e-10693.94Probable chromatin-remodeling complex ATPase chain... [more]
SMCA5_HUMAN2.018e-7062.12SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_MOUSE4.495e-7061.62SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA1_HUMAN3.221e-6860.10Probable global transcription activator SNF2L1 OS=... [more]
SMCA1_MOUSE4.207e-6860.10Probable global transcription activator SNF2L1 OS=... [more]
ISWI_DROME4.652e-6759.60Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
ISW1_CAEEL9.700e-6557.07Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
ISW2_YEAST5.322e-6358.29ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
ISW1_YEAST2.022e-6259.30ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617437 ID=DN617437; Name=DN617437; organism=Citrus sinensis; type=EST; length=595bp
CTTGGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTT
CAGAGGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTG
GTAACTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTG
AAGTTTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACT
GGTTGCTGGGAAGTTTGATGTCTGTGTAACAAGTTTTGAAATGGCCATTA
AAGAGAAATCTGCTTTGCGTCGTTTTAGCTGGCGTTATATTATCATTGAT
GAAGCTCATCGAATTAAGAATGAAAACTCTCTTCTTTCAAAGACAATGAG
ACTTTATAACACCAATTACCGCCTTCTCATCACGGGTACTCCACTTCAGA
ACAATCTTCATGAATTATGGTCCCTTCTAAACTTTTTGCTTCCGGAGATA
TTTAGTTCAGCTGAAACTTTTGATGAATGGTTCCAAATTTCTGGCGAANA
TGATCAGCAGGAAGTTGTCCAACAACTTCACAAGGTCCTCCGGCCGTTTC
TTCTTCGAAGATTGAAGTCAGATGTTGAGAAAGGTTTACCTCCAA
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