DN617435

Overview
NameDN617435
Unique NameDN617435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617435_ssr89 microsatellite DN617435_ssr89:89..100. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617435_ssr101 microsatellite DN617435_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5724 contig Csv1_Contig5724:1..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: APIP_HUMAN (APAF1-interacting protein OS=Homo sapiens GN=APIP PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 67/142 (47.18%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  158 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY 574
            R LI ELC+ FY LGWV+GTGG I++K  D+        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P  +EF+ITH EMIKGIK     GYY
Sbjct:   25 RYLIPELCKQFYHLGWVTGTGGGISLKHGDE--------IYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFP-GREFKITHQEMIKGIKKCTSGGYY 153          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: APIP_XENTR (APAF1-interacting protein homolog OS=Xenopus tropicalis GN=apip PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 67/142 (47.18%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  158 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY 574
            R LI ELCR FY LGWV+GTGG I++K  D+        I ++PSGVQKER++P+D++V   +   +               S C PLFM AY  RDAGAVIH+H   + + T++ P  KEF ITH EMIKGIK     GYY
Sbjct:   22 RNLIPELCRQFYNLGWVTGTGGGISLKYGDE--------IYIAPSGVQKERIQPDDLFVCDIDEKDISSPPPYRNLKK----SQCTPLFMNAYTMRDAGAVIHTHSKAAVMATLMFP-GKEFLITHQEMIKGIKKGTSGGYY 150          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: APIP_XENLA (APAF1-interacting protein homolog OS=Xenopus laevis GN=apip PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 67/142 (47.18%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  158 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY 574
            R LI ELCR FY LGWV+GTGG I++K  D+        I ++PSGVQKER++P+D++V   +   +               S C PLFM AY  RDAGAVIH+H   + + T++ P  KEF ITH EMIKGIK     GYY
Sbjct:   22 RNLIPELCRQFYNLGWVTGTGGGISLKYGDE--------IYIAPSGVQKERIQPDDLFVCDIDEKDISCPPPYRNLKK----SQCTPLFMNAYTMRDAGAVIHTHSKAAVMATLMFP-GKEFLITHQEMIKGIKKGTSGGYY 150          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: APIP_MOUSE (APAF1-interacting protein OS=Mus musculus GN=Apip PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = 2
Query:  158 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY 574
            R LI ELC+ FY LGWV+GTGG I++K  ++        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P  +EF+ITH EMIKGI+     GYY
Sbjct:   24 RFLIPELCKQFYHLGWVTGTGGGISLKHGNE--------IYIAPSGVQKERIQPEDMFVCDINEQDISGPPASKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFP-GQEFKITHQEMIKGIRKCTSGGYY 152          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: APIP_CHICK (APAF1-interacting protein homolog OS=Gallus gallus GN=APIP PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  158 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY 574
            R LI ELCR FY LGWV+GTGG I++K  ++        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P   EF ITH EMIKGI+     GYY
Sbjct:   25 RNLIPELCRLFYGLGWVTGTGGGISLKHGNE--------IYIAPSGVQKERIQPEDMFVCDMNEQDISGPPAHKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLYP-GNEFTITHQEMIKGIQKCSSGGYY 153          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: APIP_DANRE (APAF1-interacting protein homolog OS=Danio rerio GN=apip PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  149 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK 559
            ++ RVLI +LCR FY LGWV+GTGG I+++ H +        I ++PSGVQKER++PED++V   +   +               S C P FM AY  R A AVIH+H   + + T++ P  KEFRITH EMIKGI+
Sbjct:   21 EDPRVLIPQLCRLFYELGWVTGTGGGISLR-HGEH-------IYIAPSGVQKERIQPEDLFVCDIDEKDISCPPPQKKLKK----SQCTPPFMNAYTMRGAQAVIHTHSKSAVMATLLFP-GKEFRITHQEMIKGIR 144          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: YJZ4_YEAST (Putative aldolase class 2 protein YJR024C OS=Saccharomyces cerevisiae GN=YJR024C PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  164 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGI 556
            LI  LC+ F+   W +GTGG I+IK  + +         ++PSGVQKE+M PED++V+     TL               S C PLF+  Y+K++AGA+IH+H   + + +++     EFRI ++E IK I
Sbjct:   19 LICTLCKQFFHNNWCTGTGGGISIKDPNTNY------YYLAPSGVQKEKMIPEDLFVMDAQ--TLEYLRSPKLYKP----SACTPLFLACYQKKNAGAIIHTHSQNAVICSLL--FGDEFRIANIEQIKAI 135          
BLAST of DN617435 vs. ExPASy Swiss-Prot
Match: YK95_SCHPO (Putative aldolase class 2 protein C20H4.05c OS=Schizosaccharomyces pombe GN=SPAC20H4.05c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 52/148 (35.14%), Postives = 72/148 (48.65%), Query Frame = 2
Query:  146 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEK-RDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMI----KGIKGHGYY 574
            +K+   LI E+CR  YT GWV+GTG +I I                +PSGVQKERME   ++V+S     L               S C PLF+  Y   RDA A IH+H  E+ L++ +   S  F  T  E++    KG K +G++
Sbjct:   17 LKKCGELICEICRDLYTSGWVTGTGDAIVI----------------APSGVQKERMELHHLFVMS-----LITREYMRMPALRLKPSQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSYIPKGSKNNGFH 143          
The following BLAST results are available for this feature:
BLAST of DN617435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
APIP_HUMAN2.910e-2647.18APAF1-interacting protein OS=Homo sapiens GN=APIP ... [more]
APIP_XENTR3.801e-2647.18APAF1-interacting protein homolog OS=Xenopus tropi... [more]
APIP_XENLA3.801e-2647.18APAF1-interacting protein homolog OS=Xenopus laevi... [more]
APIP_MOUSE3.218e-2545.77APAF1-interacting protein OS=Mus musculus GN=Apip ... [more]
APIP_CHICK1.223e-2446.48APAF1-interacting protein homolog OS=Gallus gallus... [more]
APIP_DANRE3.933e-2344.53APAF1-interacting protein homolog OS=Danio rerio G... [more]
YJZ4_YEAST1.037e-1536.64Putative aldolase class 2 protein YJR024C OS=Sacch... [more]
YK95_SCHPO1.656e-1335.14Putative aldolase class 2 protein C20H4.05c OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01D07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617435 ID=DN617435; Name=DN617435; organism=Citrus sinensis; type=EST; length=584bp
GCCATTAGTAGTCATTACAATTGGAAAAGCTCTCAAAGAGAACAGCTTCC
TATCAAGAGCAAAGCAAATGGCAACGTTGGCAGTGAACGGAGGAGGAGGA
GCAGCAGCAGCAACGCATACGCAGGCTTATTTGGAGGGCAGAGCAGTGAA
GGAGACGAGGGTGTTGATATCAGAGCTCTGCCGTCATTTCTACACCCTTG
GATGGGTTTCTGGGACAGGTGGCAGCATCACCATCAAGGTCCATGATGAC
TCCATCCCTAAACCTCAACAGCTCATCCTCATGTCACCTTCTGGTGTGCA
GAAGGAGAGAATGGAACCAGAGGACATGTATGTGTTATCTGGAAATGGGA
CTACGTTGTCTTCACCATCTCCAAAACCGTACCCACATAAGCCTCCCAAG
TGTTCAGATTGTGCTCCTCTTTTCATGAAGGCATACGAGAAACGTGATGC
AGGGGCTGTTATCCACAGCCATGGCATAGAATCTTGCCTTGTGACAATGA
TCAATCCAATGTCAAAAGAATTTCGTATAACTCACATGGAGATGATAAAA
GGAATCAAAGGGCATGGTTACTATGATGAACTCG
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