DN617423

Overview
NameDN617423
Unique NameDN617423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:299..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 2.645e-54
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 3.454e-54
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 4.512e-54
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 5.892e-54
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.005e-53
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.005e-53
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.313e-53
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = -1
Query:  221 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 526
            RHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 3.819e-53
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 4.988e-53
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of DN617423 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 5.515e-52
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = -1
Query:  218 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 526
            RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:   79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of DN617423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
ARF2_ORYSJ2.645e-5499.03ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH3.454e-5499.03ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH4.512e-5499.03ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CATRO5.892e-5499.03ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_VIGUN1.005e-5398.06ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_ORYSJ1.005e-5398.06ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE1.313e-5398.04ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_DAUCA3.819e-5397.09ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA4.988e-5397.09ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_MAIZE5.515e-5295.15ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617423 ID=DN617423; Name=DN617423; organism=Citrus sinensis; type=EST; length=526bp
AATTCTGGAATAATCGAGGGTAATTTAAACTCTACAATGACAATGCAGAA
AACTTTATAGTATGGTGCCAATCAAATATCTAACACAAACAAATACATTC
TACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGACAAAATAAACA
AAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAGAGTCGCTCAG
ACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGGAGAGCCAGTC
CAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTGCTCTGGATGT
ACCAGTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATCAGTGATCTCT
GCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAAAAACAAGCAG
CACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGCAGTTCATCTC
TAGCTTCAACCACACGGTCACGATCATTGCTATCAACCACAAAGATAAGT
CCTTGAGTGTTTTGGAAGTAATGTCT
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