DN617413

Overview
NameDN617413
Unique NameDN617413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.045e-39
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = -3
Query:  184 GQDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIV 627
            GQD LDF+LEGGT+  WWNDQR+W IRG S HLFG +E+ LK L +S  GFNVTSK  DD EQSK Y +E+ +FG  S MF+ L   AIVN  +F +G   +       EGL L+++LA F ++NC P+YEAMVLR D GK+P +V  V
Sbjct:  589 GQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNLLAFVWGLYGLFAW---GEGLVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRVCFV 734          
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.715e-36
Identity = 75/145 (51.72%), Postives = 97/145 (66.90%), Query Frame = -3
Query:  193 QDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDD-EQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKV 624
            QD  DFLLEGGT+RKWWNDQR+W++RGLS   FG  E+ LK L +S  G+NVTSK  DD EQ K Y QE+ DFG  S MF+ +   AI+N  +F  G   +       EG  L+++LA F ++NC P+YEAMVLR D GK+P ++
Sbjct:  561 QDLSDFLLEGGTYRKWWNDQRMWMVRGLSSFFFGFTEFTLKTLNLSTQGYNVTSKSNDDNEQMKRYEQEIFDFGPSSSMFLPITTVAIMNLLAFMRGLYGIFTW---GEGPVLELMLASFAVVNCLPIYEAMVLRIDDGKLPKRI 702          
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.284e-33
Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = -3
Query:  205 QDCLDFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKV-VDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMI-CGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKM 624
            QD  DFLLEGGT+RKWWNDQR+ +I+GLS   FG +E++LK L +S   FNVTSK   DDEQ K Y QE+ DFG  S MF+ L   AIVN  +F +G   ++ CG +    L L+++L  F ++NC P+Y AMVLR D GK+
Sbjct:  571 QDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCGGE----LYLELMLVSFAVVNCLPIYGAMVLRKDDGKL 708          
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 59/143 (41.26%), Postives = 95/143 (66.43%), Query Frame = -3
Query:  187 DFLLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICG-SDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTI 612
            +FL  GGTFR WWN+QR+WL R  S  LFG ++ + K LG+S   F +T+KV ++E ++ Y +E+++FGV SPMF+ L    ++N F F+    +++ G   D + + +Q ++ G +++  WP+Y+ M+LR DKGKMP  VT+
Sbjct:  571 EFLWCGGTFRGWWNEQRMWLYRRTSSFLFGFMDTIKKLLGVSESAFVITAKVAEEEAAERYKEEVMEFGVESPMFLVLGTLGMLNLFCFAAAVARLVSGDGGDLKTMGMQFVITGVLVVINWPLYKGMLLRQDKGKMPMSVTV 713          
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 57/140 (40.71%), Postives = 92/140 (65.71%), Query Frame = -3
Query:  187 LLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTI 606
            LL G T + WWN QR+W+++ ++ +L+G ++ + K LG+S   F +T+KV D +++K Y QE+L+FG  SP FV +A  A++NF     G  +++ G   N  LP Q++L G I++   P+YEAM +R DKG++P  VT+
Sbjct:  576 LLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKVSDGDEAKRYEQEILEFGSSSPEFVIIATVALLNFVCLVAGLSKIMAGV-WNVFLP-QVILCGLIVITNIPIYEAMFVRKDKGRIPLPVTL 713          
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.195e-25
Identity = 57/143 (39.86%), Postives = 91/143 (63.64%), Query Frame = -3
Query:  187 LLEGGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMICGSDD---NEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTI 606
            LL G T + WWN QR+W+++ ++ +L+G ++ + K +G+S   F VT+KV   +++K Y QE+L+FG  SP +V +A  A++NF     G  Q++ G  +   N  LP Q +L G I++   P+YEAM LR D G++PT VT+
Sbjct:  581 LLSGDTLKGWWNGQRMWMVKSITSYLYGFIDTIRKCVGMSKMSFEVTAKVSGHDEAKRYEQEILEFGSSSPEYVIIATVALLNFVCLVGGLSQIMAGVWNMPWNVFLP-QAILCGMIVIINMPIYEAMFLRKDNGRIPTAVTL 722          
BLAST of DN617413 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = -3
Query:  184 GGTFRKWWNDQRIWLIRGLSCHLFGTLEYLLKFLGISAFGFNVTSKVVDDEQSKIYSQEMLDFGVPSPMFVTLAVAAIVNFFSFSFGFLQMIC--GSDDNEGLPLQMLLAGFIMLNCWPVYEAMVLRTDKGKMPTKVTIV 597
            G +  +WWN QR+WLIR ++ +L  T++   + LGIS  GFN+T KV D +  + Y + M++FG  S MFV L   A++N      G  +++   G    E L LQ +L   I+    PVYEA+ LR DKG +P  V  V
Sbjct:  591 GDSAVEWWNAQRMWLIRRITSYLLATIDTFRRILGISESGFNLTVKVTDLQALERYKKGMMEFGSFSAMFVILTTVALLNLACMVLGISRVLLQEGPGGLETLFLQAVLCVLIVAINSPVYEALFLRRDKGSLPASVARV 730          
The following BLAST results are available for this feature:
BLAST of DN617413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CSLG3_ARATH2.045e-3954.36Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG2_ARATH4.715e-3651.72Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG1_ARATH1.284e-3352.11Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLE1_ARATH3.866e-3041.26Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLE6_ORYSJ1.520e-2640.71Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ORYSJ2.195e-2539.86Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE2_ORYSJ8.080e-2039.29Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617413 ID=DN617413; Name=DN617413; organism=Citrus sinensis; type=EST; length=629bp
ATAAATTATTATTTAAAAATAATGATAAAATGAGTTATTACATCGAACCC
TAAATAGCGAAAAGAGCTTCTTTTTTTTATTATTAATTTTTTTTTTTACC
CTCTAAGCAGCTAAGCAAAAAGTCCTTACTTAGAGAACGAGAAATGATGC
TGCAGCATAAAGAGTCCATGCTAGAAATGCTGCAACAATAGTAACTTTGG
TAGGCATCTTTCCTTTATCAGTTCTCAACACCATGGCTTCATAAACTGGC
CAGCAATTCAACATGATGAAACCTGCTAGCAACATCTGCAAGGGTAGTCC
CTCGTTATCATCGCTGCCGCAGATCATCTGTAAGAACCCAAAAGAAAATG
AGAAAAAGTTAACTATTGCTGCCACTGCCAGTGTCACAAACATAGGCGAT
GGCACTCCAAAATCAAGCATCTCTTGGCTATATATTTTGCTTTGTTCATC
ATCAACGACTTTGCTGGTCACATTGAATCCAAATGCAGAAATTCCCAAGA
ACTTGAGTAAGTACTCAAGTGTTCCAAAAAGGTGACAAGAAAGCCCCCTT
ATTAGCCATATTCTCTGATCATTCCACCATTTTCGAAATGTACCTCCTTC
CAATAGGAAATCTAGACAATCTTGTCCAT
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