DN617411

Overview
NameDN617411
Unique NameDN617411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5720 contig Csv1_Contig5720:532..1181. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617411 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.349e-38
Identity = 77/99 (77.78%), Postives = 91/99 (91.92%), Query Frame = -3 
Query:  350 MMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 646
            MM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:  142 MMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
The following BLAST results are available for this feature:
BLAST of DN617411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH5.349e-3877.78Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617411 ID=DN617411; Name=DN617411; organism=Citrus sinensis; type=EST; length=648bp
GGCCCCCCCCTTTTTTTTTAACTCAAGTAACCNTCTTTTATTAGAAACTC
AATGTGGCAAGCAAATACTTATCTTCCAGGTTTATTAGAAACTCAATCCG
TCCATTTTTTGCTCGTTTGGGGAAAAGCGCAATGGGAATACGATCCATTA
AATACATTAAAACTGGCTAATAACACAGGATGAAAGGTGCCGAATGTGTG
ATTTCATTGCACAAACAGTGATAAACGGAATTCCAGTTCTCTCATGGTCT
CTTATTCTTAAAATCGGGAGCAATGATGGTATTTTCCACATTCCAAGTTG
CTGATTTCCATTATGCTCAAAAACCGTAAAAAGTAAATGCAGAGACTCAA
AGGAAGTTTCTGACATCCAAGGACTTCACTTCGACCATTTCCTCATCCTT
GAATTCCTCTCTCTTCTTTTGTGTTTCCATGGCCTCAAGAGCATCCTTCT
TCAATTCTTCCAACTGTGCTTTGGCAATTTTGAGTTCCAACTGTTCTTCA
TACTTTGGTAGATCCTCCTTTCGGATCCCAAGCTTCTTATTAATCTTGTC
AAACTCAGCTGTAAGAAGAGCCATCCCCTTCTTATCATTCCTCATAAGAG
GCTTTTTAATTTCTTTTTCAACTTTCTCCAATGCATCCATCATCATAG
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