DN617410

Overview
NameDN617410
Unique NameDN617410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617410_ssr15 microsatellite DN617410_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:32..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.600e-72
Identity = 124/151 (82.12%), Postives = 133/151 (88.08%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEM 533
            DLCK+PV GFSAGLVDE NIFEWSVTIIGPPDTLYEGGFF AIMSFP NYPNSPPTV+FT++IWHPNVYPDGRVCISILHPPGDDP+GYELASERW PVHTVE            PNDESPANVEAAKEWR++RD+FKKKV RCVR+SQEM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEM 165          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 4.435e-72
Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEM 533
            DLCK+PV GFSAGLVDE NIFEWSVTIIGPPDTLYEGGFFNAIM+FP NYPNSPPTV+FT+++WHPNVY DGRVCISILHPPGDDP+GYELASERW PVHTVE            PNDESPANVEAAKEWRD+RD+FKKKV RCVR+SQEM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEM 165          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 5.994e-69
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 536
            DLCK PV GFSAGLVDE N+F+WSV+I+GPPDTLYEGGFFNAIMSFP NYP SPPTV FT+E+WHPNVY DG+VCISILHPPGDDP+GYELASERW PVHTVE            PNDESPANVEAAKEWRD R +F+KKV RCVRRSQEML
Sbjct:   16 DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQEML 167          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.206e-63
Identity = 108/147 (73.47%), Postives = 124/147 (84.35%), Query Frame = 3
Query:   96 PVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 536
            P  GF  G VD++N+FEW VTIIGPP+TLY+GG+FNAIMSFP NYPNSPPTV+FT+E+WHPNVYPDGRVCISI HPPGDDPNGYELASERW PVHTVE            PNDESPAN+EAAK+WR+++D+FKKKV R VR+SQEML
Sbjct:   23 PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.070e-53
Identity = 96/152 (63.16%), Postives = 115/152 (75.66%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 536
            ++ KNP  GFS GLVD+ +IFEW V IIGP DTLYEGGFF+A +SFP +YP  PP +KFTTEIWHPNV+P+G VCISILHPPGDD  GYE A ERW+PVH+ E            PNDESPAN++AAKE+R+   +FKK+V R VRRS EM+
Sbjct:   16 EIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIEMI 167          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 530
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 530
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 530
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.653e-50
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 530
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE    RW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of DN617410 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.771e-50
Identity = 91/150 (60.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:   81 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXXPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 530
            D+ + PV GFSAGLVD+ +I++W V +IGPPDTLYEGGFF AI+ FP +YP  PP +KF +EIWHPN+  +G VCISILH PGDD  GYE   ERW+PVHTVE            PN ESPANV+AAK  R+   +FKKKV +CVRRSQE
Sbjct:   14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163          
The following BLAST results are available for this feature:
BLAST of DN617410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
UBC13_ARATH2.600e-7282.12Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_ARATH4.435e-7281.46Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC14_ARATH5.994e-6978.29Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_WHEAT2.206e-6373.47Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC15_SCHPO2.070e-5363.16Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2G1_RAT5.636e-5160.93Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE5.636e-5160.93Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN5.636e-5160.93Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G1_MACFA3.653e-5060.26Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBC7_CAEEL4.771e-5060.67Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617410 ID=DN617410; Name=DN617410; organism=Citrus sinensis; type=EST; length=574bp
AGAGCCAATTCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAG
GCAAGTCTCCTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGT
TGCTGGGTTTTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGA
GTGTTACAATTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTC
AATGCCATTATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGT
GAAGTTTACAACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTG
TCTGCATATCAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAG
CTTGCAAGTGAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTT
GAGTATCATATCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATG
TCGAAGCTGCAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAA
GTAGGCCGCTGTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAA
GCACTCTTTTTTCTCTACCTATGT
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