DN617408

Overview
NameDN617408
Unique NameDN617408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8101 contig Csv1_Contig8101:529..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617408 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.842e-22
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = -2 
Query:  326 EKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRSR 565
            E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  161 EAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240
[Close]
BLAST of DN617408 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.842e-22
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = -2 
Query:  326 EKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRSR 565
            E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  161 EAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240
[Close]
BLAST of DN617408 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = -2 
Query:  329 EKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRS 565
            E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:  160 EAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238
[Close]
BLAST of DN617408 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.366e-17
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = -2 
Query:  329 EKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRS 565
            E  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:  160 EADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238
The following BLAST results are available for this feature:
BLAST of DN617408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ1.842e-2263.75Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI1.842e-2263.75Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ7.244e-1955.70Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE1.366e-1753.16Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617408 ID=DN617408; Name=DN617408; organism=Citrus sinensis; type=EST; length=566bp
TTTGACTAATTTACCCAATGCCCAATGGCATCAATTTTTATTAATGATAG
CACAACGCTAAACAAACACTAATACTTTTAAGATAATAAACAAGACGGCA
GTCAACAAACATATAGGTACATATGAGATAGCATTCTGTCATACGAGATA
TCAACAAGTCATCAACTCATTCAATATCCAGCAACGTACACAAGCTCACA
TCGGCAAACAATATGTAATGTGTATAACGCGCAGCTTTATTATACGAGAT
TTCACAAACCACGCCACCAACTGATTCAGTGCGCTTCTAAGACGACTGAT
TGCAGGTTCACTGCTTGGCCACGAAGCGGCTCCTGTAAAATTCAACGAGT
TGTTTTGGATCTGCTTTTGTTGACTTGTAAGCATCGAGCTTGTTCAACTC
CTCAATCCATGCTGCCAGTTTAGGCCTGCCTGCAGTGATGTCATACTTAA
ATTCTTCTGATAAGAAGATCTGGAATCTCTCAACAAATGGAATATAGGCT
ATGTCCACCTGACTGAACTGTCCAAGGAAGAACGGGCCATCATCAAATTT
ATCAAGGGCCTTCTCT
back to top