DN617396

Overview
NameDN617396
Unique NameDN617396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617396_ssr171 microsatellite DN617396_ssr171:171..182. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13169 contig Csv1_Contig13169:3..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR4_MOUSE (Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.698e-21
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  121 CFSHFWSSALRAKTLTAPSVRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 537
            C + F     R K L   S+ T+                +GVG  VG+G++V+TGTVA+D AGP V +SFL+A  AS+L ALCYAE  +R P   G AYL+ Y +  E+ AFL+   ++L+Y IG A++AR+ + Y+ +I
Sbjct:   10 CLARFCQKLNRLKPLEESSMETS----LRRCLSTLDLTLLGVGGMVGSGLYVLTGTVAKDMAGPAVLLSFLVAAVASLLAALCYAEFGARVPRT-GSAYLFTYVSMGEIWAFLIGWNVLLEYLIGGAAVARAWSGYLDAI 144          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: S7A14_MOUSE (Probable cationic amino acid transporter OS=Mus musculus GN=Slc7a14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 537
            +GVG+ VG G++VV+G VA++ AGPGV +SF++A  AS+L+ +CYAE   R P   G AY Y+Y    E  AF +   L+L+Y IG A+ A +L+S   S+
Sbjct:   61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSL 161          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: S7A14_HUMAN (Probable cationic amino acid transporter OS=Homo sapiens GN=SLC7A14 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 537
            +GVG+ VG G++VV+G VA++ AGPGV +SF++A  AS+L+ +CYAE   R P   G AY Y+Y    E  AF +   L+L+Y IG A+ A +L+S   S+
Sbjct:   61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSL 161          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: S7A14_BOVIN (Probable cationic amino acid transporter OS=Bos taurus GN=SLC7A14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 537
            +GVG+ VG G++VV+G VA++ AGPGV +SF++A  AS+L+ +CYAE   R P   G AY Y+Y    E  AF +   L+L+Y IG A+ A +L+S   S+
Sbjct:   61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSL 161          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR4_HUMAN (Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 48/101 (47.52%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 537
            +GVG  VG+G++V+TG VA++ AGP V +SF +A  AS+L ALCYAE  +R P   G AYL+ Y +  EL AFL+   ++L+Y IG A++AR+ + Y+ S+
Sbjct:   45 LGVGGMVGSGLYVLTGAVAKEVAGPAVLLSFGVAAVASLLAALCYAEFGARVPRT-GSAYLFTYVSMGELWAFLIGWNVLLEYIIGGAAVARAWSGYLDSM 144          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: YFNA_BACSU (Uncharacterized amino acid permease yfnA OS=Bacillus subtilis GN=yfnA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELF 549
            +G+G  +G GIFV+TGTVA   AGP + ISF+LAG A  L A CYAE +S  P + G  Y Y+Y    EL AFL+   LML+Y I  +++A   +SY  S+L  F
Sbjct:   34 LGIGCVIGTGIFVITGTVAATGAGPALIISFILAGLACALAAFCYAEFSSSIP-ISGSVYSYSYVTLGELLAFLIGWDLMLEYVIALSAVATGWSSYFQSLLAGF 137          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_XENLA (Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.188e-18
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VA+ D+GP + ISFL+A  ASVL  LCYAE  +R P + G AYLY+Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKVDSGPSIIISFLIAALASVLAGLCYAEFGARVP-LTGSAYLYSYVTVGELWAFITGWNLILSYVIGTSSVARA 133          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR2_CHICK (Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.552e-18
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y A  EL AF+    L+L Y IG +S+AR+
Sbjct:   41 LGVGSTLGAGVYVLAGEVAKSDSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVAVGELWAFITGWNLILSYVIGTSSVARA 132          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR1_RAT (High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VAR+ AGP + ISFL+A  ASVL  LCY E  +R P   G AYLY+Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   40 LGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAGLCYGEFGARVPK-TGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARA 131          
BLAST of DN617396 vs. ExPASy Swiss-Prot
Match: CTR1_MOUSE (High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.026e-18
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  238 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARS 513
            +GVG+++GAG++V+ G VAR+ AGP + ISFL+A  ASVL  LCY E  +R P   G AYLY+Y    EL AF+    L+L Y IG +S+AR+
Sbjct:   40 LGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLAGLCYGEFGARVPK-TGSAYLYSYVTVGELWAFITGWNLILSYIIGTSSVARA 131          
The following BLAST results are available for this feature:
BLAST of DN617396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CTR4_MOUSE5.698e-2140.71Cationic amino acid transporter 4 OS=Mus musculus ... [more]
S7A14_MOUSE6.965e-1945.54Probable cationic amino acid transporter OS=Mus mu... [more]
S7A14_HUMAN6.965e-1945.54Probable cationic amino acid transporter OS=Homo s... [more]
S7A14_BOVIN6.965e-1945.54Probable cationic amino acid transporter OS=Bos ta... [more]
CTR4_HUMAN6.965e-1947.52Cationic amino acid transporter 4 OS=Homo sapiens ... [more]
YFNA_BACSU9.097e-1947.62Uncharacterized amino acid permease yfnA OS=Bacill... [more]
CTR2_XENLA1.188e-1850.54Low affinity cationic amino acid transporter 2 OS=... [more]
CTR2_CHICK1.552e-1849.46Low affinity cationic amino acid transporter 2 OS=... [more]
CTR1_RAT2.026e-1850.54High affinity cationic amino acid transporter 1 OS... [more]
CTR1_MOUSE2.026e-1850.54High affinity cationic amino acid transporter 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617396 ID=DN617396; Name=DN617396; organism=Citrus sinensis; type=EST; length=557bp
TTCATCTCCGACAATTAATAAAATTTATCAATCATGGGAGGTGAAAACGT
TCAGATCGAAAAAAGCAACAATAATTCGTCATCGTCATCATCACCATCTG
CGTCAGGTCCACCACCCACGTGTTTCTCTCATTTCTGGTCTTCAGCTCTC
CGAGCCAAAACCCTAACTGCTCCGTCCGTCCGTACAAATGATGGCGAAGG
ACTTTTACGGCGGCTCGGACTCTTCGAACTGGTGCTCATCGGCGTCGGCG
CGTCTGTTGGCGCCGGAATATTCGTTGTCACCGGTACCGTGGCTCGCGAC
GCCGGTCCAGGAGTTACAATTAGTTTCTTACTTGCTGGAGCAGCTTCTGT
GTTAAATGCACTCTGTTATGCTGAGCTGGCATCTCGTTTTCCTGCCGTTG
TTGGGGGAGCATACTTGTATGCGTATACAGCATTCAATGAACTTACAGCT
TTTCTTGTTTTTGCACAACTTATGTTGGACTACCATATTGGTGCAGCGAG
CATAGCACGAAGCTTAGCTAGCTATGTAGTTTCAATTTTGGAGCTCTTTC
CCTTTTT
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