DN617388

Overview
NameDN617388
Unique NameDN617388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1112..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.201e-51
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = -3
Query:  116 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 469
            EAGLTWAI KRRRAEGGFLGAE ILKQ++EGP +RRVGFF+ GPP RSHS++ D  G  IGEITSGGFSPCLKKNIAMGYVK+G HKAGT VKI +RGK+YDG +TKMPFVPTKYYKP
Sbjct:  289 EAGLTWAIGKRRRAEGGFLGAEVILKQIEEGPKIRRVGFFSSGPPPRSHSEIQDSNGQNIGEITSGGFSPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDGVVTKMPFVPTKYYKP 406          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.201e-51
Identity = 97/119 (81.51%), Postives = 106/119 (89.08%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGLTWAI KRRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct:  290 EAGLTWAIGKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.676e-51
Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGLTWAI KRRRAEGGFLGAE ILKQ+ +GP +RRVG F+ GPPARSHS++ +EQG  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  289 EAGLTWAIGKRRRAEGGFLGAEVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEQGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 7.786e-51
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGLTWAI KRRRAEGGFLGA+ ILKQL +GP +RRVGF + GPP RSHS++ DE GN IGE+TSGGFSPCLKKNIA+GYVKSGLHKAGTKVKI +RGK  +G +TKMPFVPTKYYKPS
Sbjct:  290 EAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPPRSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKQNEGVVTKMPFVPTKYYKPS 408          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.734e-50
Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGLTWAI KRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  289 EAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.734e-50
Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = -3
Query:  113 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 469
            EAGLTWAI KRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  289 EAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.468e-49
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = -3
Query:  119 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 469
            EAGLTWA+ KRRRAEGGFLGAE ILKQ+ +GPP RRVGF + GPPAR HS++ +E+G  IGEITSGGFSPCLKKNIAMGYVKSG HKAGTKV I VRGK Y+G +TKMPFVPTKYYK
Sbjct:  290 EAGLTWAVGKRRRAEGGFLGAEVILKQIADGPPQRRVGFISSGPPARGHSEIQNEKGESIGEITSGGFSPCLKKNIAMGYVKSGNHKAGTKVNILVRGKPYEGVVTKMPFVPTKYYK 406          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.210e-27
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = -3
Query:  119 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 469
            E  L+W I KRRR EGGF+G+ +ILK+L +GP  RRVGF     PAR H    +  G  +G++TSG  SP L KNIAMGY+ +GLH+ GT   I+VR K +   + +MPFV T YYK
Sbjct:  272 EGSLSWIIGKRRRKEGGFVGSSRILKELKDGPSRRRVGFIVEKVPAR-HGSAVEVDGVEVGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNKLHPAQVVRMPFVETHYYK 387          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.788e-24
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = -3
Query:  122 EAGLTWAIEKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 469
            EAGL W + KRRR    F GA  I++Q+ E P  +RVG  + GPP R  + +   +G P+G +TSG  SP L KNIAMGYV++   + GT + +EVR K +   +TKMPFVPT YY
Sbjct:  274 EAGLLWTLGKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTPVGTVTSGCPSPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYY 389          
BLAST of DN617388 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.060e-23
Identity = 59/119 (49.58%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  119 EAGLTWAIEKRRRAEGGFLGAEKILKQLD-EGPPVRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 469
            EA L W I KRRR EGGF GA  I KQL  +G P +RVG    G PAR    + D   N  IG++TSG  SP  +++I+M YVK+   K GT+V + +RGK     I+KMPFVPT Y K
Sbjct:  284 EASLNWLISKRRREEGGFPGASIIQKQLQKDGCPQKRVGVIINGAPAREGCLILDPSTNQEIGKVTSGTISPITRQSISMAYVKTPFSKIGTQVNVSIRGKPITATISKMPFVPTNYKK 402          
The following BLAST results are available for this feature:
BLAST of DN617388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GCST_SOLTU1.201e-5179.66Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_ARATH1.201e-5181.51Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_FLATR2.676e-5177.31Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA7.786e-5178.99Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_FLAPR1.734e-5075.63Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN1.734e-5075.63Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_MESCR1.468e-4978.63Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_SCHPO1.210e-2751.28Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_CHICK2.788e-2448.28Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_DICDI1.060e-2349.58Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617388 ID=DN617388; Name=DN617388; organism=Citrus sinensis; type=EST; length=471bp
TAAAGAACTGCTAGCAATAAAGACAGTAATCTCGAGCAGTCAATGTTTAT
GAAACAAGTCAAAACAGGAATCGAGTAGAGCTTCCATAAGCAGAACCAAC
AAAGATGTACTAAGACGGCTTGTAGTATTTTGTTGGCACAAATGGCATTT
TAGTGATGTTTCCATCGTAGGCTTTTCCTCGAACCTCAATCTTAACTTTT
GTGCCTGCCTTGTGCAATCCAGATTTTACATATCCCATGGCTATATTCTT
CTTGAGGCAGGGGCTGAATCCTCCACTGGTAATTTCTCCAATGGGATTCC
CTTGCTCATCGTGAACCTTACTGTGTGATCTGGCAGGCGGACCTCCAGCG
AAGAATCCAACACGTCTGACTGGCGGACCTTCGTCAAGTTGTTTGAGTAT
TTTCTCAGCACCTAGAAAGCCACCTTCTGCTCTCCTCCTCTTTTCTATGG
CCCATGTCAGTCCAGCTTCTA
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