DN617386

Overview
NameDN617386
Unique NameDN617386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3552 contig Csv1_Contig3552:393..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617386 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.676e-75
Identity = 141/197 (71.57%), Postives = 157/197 (79.70%), Query Frame = 1
Query:    1 ANPKRARLFHDKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSYYEPAVEYLATTRTLPRLIDXXXXXXXXXXXXXXXLILRNLLPK 591
            ANP RARLFHD+SLA+EDTYEPFLRLLWKGNWFIQEKSCKILA I+SARPK  +    NG           IDDVLK LVEWLCAQLK+PSHP+RGVP+AI+CL++LLKEP+VRSSFVQADGVKLL PLISPASTQQSIQLLYETCLC+WLLSYYEPA+EYLAT+RT+ RL +               L  RNLLPK
Sbjct:   87 ANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNG-----------IDDVLKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTMQRLTEVVKHSTKEKVVRVVILTFRNLLPK 272          
BLAST of DN617386 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.954e-68
Identity = 125/196 (63.78%), Postives = 152/196 (77.55%), Query Frame = 1
Query:    4 NPKRARLFHDKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSYYEPAVEYLATTRTLPRLIDXXXXXXXXXXXXXXXLILRNLLPK 591
            NPKRA LF+D SL+ ED Y+PFLRLL KGNWF+QEKSCKIL  I+SARPK Q+    NGEASNSKSK T+  DVL+ LV+WLC+QL+ P+HP+  VP A++CLA LL+E  VR+ FVQADGVKLL PLISPASTQQSIQLLYETCLC+WLLS+Y+ AV+YL+TTR +PRL++               + +RNLL K
Sbjct:   88 NPKRAALFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKSKLTSTQDVLRGLVDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAK 283          
The following BLAST results are available for this feature:
BLAST of DN617386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VATH_ARATH3.676e-7571.57V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_ORYSJ1.954e-6863.78Probable V-type proton ATPase subunit H OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617386 ID=DN617386; Name=DN617386; organism=Citrus sinensis; type=EST; length=605bp
GCCAATCCAAAGAGAGCCAGATTATTCCATGATAAATCTCTTGCAAGTGA
AGATACTTACGAACCTTTCTTAAGATTGCTGTGGAAAGGTAATTGGTTCA
TACAAGAAAAGAGCTGTAAGATATTAGCTTCGATTGTAAGTGCTAGGCCA
AAACCACAGGATCGCTTTTTTGCTAATGGGGAAGCCTCAAATTCAAAAAG
CAAATCCACTACCATTGATGATGTTTTAAAATTATTGGTTGAATGGCTTT
GTGCACAGCTGAAGAAGCCTTCCCATCCTAGTCGTGGCGTTCCAGTTGCT
ATCAATTGCCTTGCAGCATTACTGAAGGAACCTATGGTGAGATCTTCCTT
CGTTCAAGCAGATGGGGTGAAGCTGTTGACCCCTTTAATTTCACCTGCAT
CCACGCAGCAATCTATCCAGCTTCTTTATGAAACATGTCTCTGCGTCTGG
CTCTTGTCTTACTATGAACCTGCAGTGGAGTACTTGGCAACTACTAGAAC
CCTGCCACGACTAATAGATGTTGTTAAGAGTTCCACAAAGGAGAAGGTTG
TCAGGGTGGTGGTCTTGATCCTTAGGAACTTGCTTCCCAAGGTAATTTTG
CTGCT
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