DN617385

Overview
NameDN617385
Unique NameDN617385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617385_ssr155 microsatellite DN617385_ssr155:155..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9083 contig Csv1_Contig9083:160..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.120e-46
Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = -3
Query:  254 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 565
            SPMHKDP FWR+NI NFEENDFQILRVL+TI+DTS+D  ALAVAC+DLSQF+QYHP+GR++V DLKAK+RVMKLMNHEN EV K+ALLC+QRLFLGAKYASFLQ
Sbjct:  348 SPMHKDPSFWRENINNFEENDFQILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNHENAEVRKNALLCVQRLFLGAKYASFLQ 451          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.075e-46
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = -3
Query:  251 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQA 565
            +PMHK+  FWR+N+T FEENDFQILRVLLTILDTSSDPR+LAVACFD+SQFIQYH AGRVIV DLKAKERVMKL+NHEN EVTK+A+LCIQRL LGAKYASFLQA
Sbjct:  337 NPMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_MANSE (V-type proton ATPase subunit H OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.784e-17
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N     E   ++LR L+ +L+ S DP  LAVAC+D+ ++++++P G+ I+  L  K+RVM L++H++  V   ALL +Q+L +
Sbjct:  354 SPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSHDPVVLAVACYDVGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 448          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_PIG (V-type proton ATPase subunit H OS=Sus scrofa GN=ATP6V1H PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  367 SPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_MOUSE (V-type proton ATPase subunit H OS=Mus musculus GN=Atp6v1h PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  367 SPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_HUMAN (V-type proton ATPase subunit H OS=Homo sapiens GN=ATP6V1H PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  367 SPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_DROME (V-type proton ATPase subunit H OS=Drosophila melanogaster GN=VhaSFD PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 36/95 (37.89%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N     E ++++LR+L+ +L+TS D   L+VACFD+ ++++++P G+ ++  L  K+ VM+ + HE+  V   ALL +Q+L +
Sbjct:  346 SPVHKSAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHYPRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMV 440          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH_BOVIN (V-type proton ATPase subunit H OS=Bos taurus GN=ATP6V1H PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 35/95 (36.84%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N     E ++++L++L  +L+ S DP+ LAVA  D+ ++++++P G+ ++  L  K+ VM  M+HE+ +V  +ALL +Q+L +
Sbjct:  367 SPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMV 461          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH2_CAEEL (Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis elegans GN=vha-15 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N + F +  F+++++L+ +L++S DP  L VA  D+ ++++++P G+ +V   + K  VM+L+  E+  V   ALL +Q+L +
Sbjct:  354 SPVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYPRGKTVVEQYQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448          
BLAST of DN617385 vs. ExPASy Swiss-Prot
Match: VATH2_CAEBR (Probable V-type proton ATPase subunit H 2 OS=Caenorhabditis briggsae GN=vha-15 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 33/95 (34.74%), Postives = 62/95 (65.26%), Query Frame = -3
Query:  281 SPMHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 565
            SP+HK   FWR+N   F +  ++++++L+ +L++SSDP  L VA  D+ ++++++P G+ +V   + K  VM+L+  E+  V   ALL +Q+L +
Sbjct:  354 SPVHKSEKFWRENAAKFNDKQYEVVKILIKLLESSSDPLILCVASHDIGEYVRHYPRGKTVVEQQQGKAAVMRLLTAEDPNVRYHALLAVQKLMV 448          
The following BLAST results are available for this feature:
BLAST of DN617385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATH_ORYSJ3.120e-4681.73Probable V-type proton ATPase subunit H OS=Oryza s... [more]
VATH_ARATH4.075e-4684.76V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_MANSE1.784e-1740.00V-type proton ATPase subunit H OS=Manduca sexta PE... [more]
VATH_PIG5.191e-1736.84V-type proton ATPase subunit H OS=Sus scrofa GN=AT... [more]
VATH_MOUSE5.191e-1736.84V-type proton ATPase subunit H OS=Mus musculus GN=... [more]
VATH_HUMAN5.191e-1736.84V-type proton ATPase subunit H OS=Homo sapiens GN=... [more]
VATH_DROME5.191e-1737.89V-type proton ATPase subunit H OS=Drosophila melan... [more]
VATH_BOVIN5.191e-1736.84V-type proton ATPase subunit H OS=Bos taurus GN=AT... [more]
VATH2_CAEEL7.496e-1634.74Probable V-type proton ATPase subunit H 2 OS=Caeno... [more]
VATH2_CAEBR7.496e-1634.74Probable V-type proton ATPase subunit H 2 OS=Caeno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617385 ID=DN617385; Name=DN617385; organism=Citrus sinensis; type=EST; length=567bp
ATCAAAAGGTCAATATCAGATGGTATCAATTTATTCCTCATCTCAAAAAC
AAAATAAATTTCCCAAATATGGTAAAAAATCAACTAATTCTTCACGGTAC
TTAAAAAAATCCAACAGACGAGTTCCCCTGATTCATAAATTCCTCCAATG
ATTGATAAATAAATAAACAACCTAACCAGCCAAACTGGAATCAAATCATT
ACAAGCATTTCCTTTGTAAACAATACTGGACCCCATAGAAAGAGAATTCA
GGCCTGCAAAAAGCTCGCGTACTTTGCGCCTAGGAAAAGCCTTTGGATGC
AGAGTAAGGCGCTCTTGGTAACCTCGGTATTCTCATGGTTCATCAATTTC
ATCACCCGTTCCTTAGCTTTGAGGTCCGTCACAATGACCCGCCCAGCTGG
ATGGTACTGGATAAATTGTGACAGATCAAAGCAAGCGACAGCAAGAGCTC
GTGGATCACTGGATGTATCCAAAATTGTTAAGAGGACCCTTAGAATCTGG
AAATCATTTTCTTCAAAGTTTGTGATATTATCACGCCAGAATAGGGGATC
TTTGTGCATAGGGGACC
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