DN617384 | Citrus Genome Database

Overview


Name	DN617384
Unique Name	DN617384
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	585

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7802	contig	Csv1_Contig7802:26..610.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP_SOYBN (Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 71/149 (47.65%), Postives = 91/149 (61.07%), Query Frame = 3

Query:  138 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEXXXXXXXXXXXXXXXXXXXXXXXXXNPFGSAFAGPEMWAKLTADP 584
            MA+EAKAKGNAAFS+GD+ AAVRHF++AI+LSP NHVLYSNRSAA           +  +KTV+LKPDW K YSRLGAAHLGL+ + +A    K   + +P+N                          +PF +AF+GP+MWA+    P
Sbjct:    1 MAEEAKAKGNAAFSAGDFAAAVRHFSDAIALSPSNHVLYSNRSAATLP-PELRGGPSRRQKTVDLKPDWPKAYSRLGAAHLGLRRHRDASPPTKPASNSNPDN------AALKSGLADAQAAASRPPPTSPFATAFSGPDMWARSPPTP 142

HSP 2 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 3

Query:  138 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            +ADEA+ KGN  F    Y  A +H+TEAI  +P +   YSNR+A +  L    + L DA+K +EL P +SKGY+R GA    +++Y +A+ +Y++GL  DPNN+
Sbjct:  380 LADEAREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQ 483

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STI1_SCHPO (Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe GN=sti1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 71/152 (46.71%), Postives = 89/152 (58.55%), Query Frame = 3

Query:  138 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNEXXXXXXXXXXXXXXXXXXXXXXXXXNPF---GSAFAGPEMWAKLTADP 584
            MA+E KAKGNAAFS  DY+ A+ +FT+AI L   NH+LYSNRSA +AS  +YADAL DA K  ELKPDW+KG+SR GAA  GL D   A ++Y++GL  D NN                          NPF   GS  + P+   KL ++P
Sbjct:    1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANN--AQLLNGLKSVEAAQTQAASGAGGFNPFAKLGSQLSDPKFMEKLASNP 150

HSP 2 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 32/101 (31.68%), Postives = 59/101 (58.42%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 437
            D A+E++ KGN  F SGD+  A++ +TE    +P +   + NR+AA+  +   A+ + D  K +EL P+++K Y R   A   L+DY + +++  +  ++D
Sbjct:  397 DKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STI1_YEAST (Heat shock protein STI1 OS=Saccharomyces cerevisiae GN=STI1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 3

Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPD-NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            ADE K +GNAAF++ DY+ A+  FT+AI +S   NHVLYSNRSA + SL  ++DAL DA + V++ P WSKGY+RLGAAHLGL D  EA ++YKK L++D +N+
Sbjct:    5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNK 108

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_DICDI (Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 3

Query:  132 ADMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            A  A E K +GNAAFSS DY +AV+ F +AI L P NH+LYSNRSA+  +L    DAL DAKK +ELKPDWSKGY R   A   L  + EA  S + GL IDP N+
Sbjct:    5 AQKATEFKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIELKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQ 110

HSP 2 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 3

Query:  153 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            K KG   F  G++  A++ F EAI  +P +H +YSNRSAA++ L  Y  A+ DA K +EL+P + KGY R G A   +++Y +A+  Y +GL I+ NN
Sbjct:  383 KNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSKLLEYKLAIKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANN 480

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_MACFA (Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 53/104 (50.96%), Postives = 69/104 (66.35%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  +E K KGN A S+G+ + A++ ++EAI L P NHVLYSNRSAA+A   +Y  A  D  KTVELKPDW KGYSR  AA   L  + EA  +Y++GL  + NN
Sbjct:    2 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVELKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

HSP 2 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 44/105 (41.90%), Postives = 69/105 (65.71%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            D+A E K KGN  F  GDY  A++H+TEAI  +P +  LYSNR+A +  L  +  AL D ++ ++L+P + KGY+R  AA   ++DY +A++ Y+K LD+D + +
Sbjct:  358 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSRK 462

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_RAT (Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  +E K KGN A S+G+ + A++ ++EAI L P NHVLYSNRSAA+A   +Y  A  D  KTV+LKPDW KGYSR  AA   L  + EA  +Y++GL  + NN
Sbjct:    2 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

HSP 2 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 437
            D+A E K KGN  F  GDY  A++H+TEAI  +P +  LYSNR+A +  L  +  AL D ++ ++L+P + KGY+R  AA   ++DY +A++ Y+K LD+D
Sbjct:  358 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_MOUSE (Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  +E K KGN A S+G+ + A++ ++EAI L P NHVLYSNRSAA+A   +Y  A  D  KTV+LKPDW KGYSR  AA   L  + EA  +Y++GL  + NN
Sbjct:    2 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

HSP 2 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 437
            D+A E K KGN  F  GDY  A++H+TEAI  +P +  LYSNR+A +  L  +  AL D ++ ++L+P + KGY+R  AA   ++DY +A++ Y+K LD+D
Sbjct:  358 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_CRIGR (Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  +E K KGN A S+G+ + A++ ++EAI L P NHVLYSNRSAA+A   +Y  A  D  KTV+LKPDW KGYSR  AA   L  + EA  +Y++GL  + NN
Sbjct:    2 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

HSP 2 Score: 90.8929 bits (224), Expect = 4.975e-18
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 437
            D+A E K KGN  F  GDY  A++H+TEAI  +P +  LYSNR+A +  L  +  AL D ++ ++L+P + KGY+R  AA   ++DY +A++ Y+K L++D
Sbjct:  358 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELD 458

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_BOVIN (Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  +E K KGN A S+G+ + A++ ++EAI L P NHVLYSNRSAA+A   +Y  A  D  KTV+LKPDW KGYSR  AA   L  + EA  +Y++GL  + NN
Sbjct:    2 EQVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANN 105

HSP 2 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPN 443
            D+A E K KGN  F  GDY  A++H+TEAI  +P +  LYSNR+A +  L  +  AL D ++ ++L+P + KGY+R  AA   ++DY +A++ Y+K LD+D N
Sbjct:  358 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSN 460

[Close]

BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: STIP1_HUMAN (Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            +  +E K KGN A S G+ + A++ ++EAI L P NHVLYSNRSAA+A   +Y  A  D  KTV+LKPDW KGYSR  AA   L  + EA  +Y++GL  + NN
Sbjct:    2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

HSP 2 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 3

Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 437
            D+A E K KGN  F  GDY  A++H+TEAI  +P +  LYSNR+A +  L  +  AL D ++ ++L+P + KGY+R  AA   ++DY +A++ Y+K LD+D
Sbjct:  358 DLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 458

The following BLAST results are available for this feature:

BLAST of DN617384 vs. ExPASy Swiss-Prot

BLAST of DN617384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47


Match Name	E-value	Identity	Description
STIP_SOYBN	6.265e-29	47.65	Heat shock protein STI OS=Glycine max GN=STI PE=2 ...	[more]
STI1_SCHPO	1.182e-27	46.71	Heat shock protein sti1 homolog OS=Schizosaccharom...	[more]
STI1_YEAST	7.658e-27	56.73	Heat shock protein STI1 OS=Saccharomyces cerevisia...	[more]
STIP1_DICDI	6.068e-24	55.66	Protein STIP1 homolog OS=Dictyostelium discoideum ...	[more]
STIP1_MACFA	1.265e-21	50.96	Stress-induced-phosphoprotein 1 OS=Macaca fascicul...	[more]
STIP1_RAT	2.158e-21	50.00	Stress-induced-phosphoprotein 1 OS=Rattus norvegic...	[more]
STIP1_MOUSE	2.158e-21	50.00	Stress-induced-phosphoprotein 1 OS=Mus musculus GN...	[more]
STIP1_CRIGR	2.158e-21	50.00	Stress-induced-phosphoprotein 1 OS=Cricetulus gris...	[more]
STIP1_BOVIN	2.158e-21	50.00	Stress-induced-phosphoprotein 1 OS=Bos taurus GN=S...	[more]
STIP1_HUMAN	6.279e-21	50.00	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS11_01C04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN617384 ID=DN617384; Name=DN617384; organism=Citrus sinensis; type=EST; length=585bp
CTCCCACTCTTCTTTTATATTTGAAACTAATCGTTTTCTTAGCTACAAAG
GAGAAGTTCAAAGGGCAGTACTTTACTCTAAATATTACTGCAACCACAAC
CACAAGCCAATCATTCTTCAATTAATTCCTTGCTGACATGGCAGACGAAG
CCAAAGCGAAAGGAAACGCTGCGTTTTCGTCCGGGGATTACGAAGCCGCG
GTGCGCCACTTCACGGAGGCCATCTCTTTATCTCCGGATAATCACGTGCT
GTATTCCAATCGATCCGCCGCGCACGCTTCTCTCCACAACTACGCCGACG
CCTTAGCCGACGCCAAGAAGACCGTCGAGCTTAAGCCGGACTGGTCCAAA
GGCTACAGCCGACTTGGCGCTGCTCACCTCGGATTACAGGACTATATCGA
AGCTGTTAACTCCTACAAGAAAGGACTTGATATCGATCCTAACAATGAAG
CCCTCAAATCCGGCTTGGCCGATGCTAAAGCGGCGGCCTCCGCGTCGTTC
AGATCTCGTTCCCCGCCGGCCGATAATCCATTTGGTTCTGCTTTTGCCGG
ACCTGAGATGTGGGCAAAATTAACGGCGGATCCGA