DN617375

Overview
NameDN617375
Unique NameDN617375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617375_ssr188 microsatellite DN617375_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4134 contig Csv1_Contig4134:100..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 2.090e-73
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEF+IEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS+EVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.355e-72
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEF+IEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS+EVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVL
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.561e-63
Identity = 126/146 (86.30%), Postives = 138/146 (94.52%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEF+IEKLQLVEAEKKKIRQEYE+KEKQVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+AS++ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL
Sbjct:    1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVL 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.554e-60
Identity = 119/146 (81.51%), Postives = 134/146 (91.78%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEF+IEKLQLVEAEKKKIR EYERKEKQV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A++E+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL
Sbjct:    1 MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEKQVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVL 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 4.998e-59
Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEF+IEKLQLVEAEKKKIRQEYERK KQV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAAS+E+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL
Sbjct:    1 MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVL 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 2.480e-58
Identity = 115/146 (78.77%), Postives = 135/146 (92.47%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEF+IEKLQLVEAEKKKIRQ+YE+KEKQ ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A++++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL
Sbjct:    1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVL 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.152e-55
Identity = 114/152 (75.00%), Postives = 133/152 (87.50%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSR------DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEF+IEKLQLVEAEKKKIRQEYE+KEKQV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A++++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+L
Sbjct:    1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESML 152          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.274e-54
Identity = 106/146 (72.60%), Postives = 133/146 (91.10%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEF+IE+LQL+E+ K+K+RQ+Y+RK KQV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A++++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVI 146          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE1_RAT (V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34
Identity = 70/146 (47.95%), Postives = 107/146 (73.29%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEF+IEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ +
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAV 148          
BLAST of DN617375 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34
Identity = 70/146 (47.95%), Postives = 107/146 (73.29%), Query Frame = 1
Query:   49 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFDIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASEEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 486
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEF+IEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ +
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAV 148          
The following BLAST results are available for this feature:
BLAST of DN617375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_CITUN2.090e-7398.63V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI1.355e-7297.95V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI2.561e-6386.30V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL1.554e-6081.51V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE_MESCR4.998e-5981.51V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE1_ARATH2.480e-5878.77V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE3_ARATH1.152e-5575.00V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH1.274e-5472.60V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE1_RAT2.498e-3447.95V-type proton ATPase subunit E 1 OS=Rattus norvegi... [more]
VATE1_MOUSE2.498e-3447.95V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617375 ID=DN617375; Name=DN617375; organism=Citrus sinensis; type=EST; length=488bp
TCTCATTTTGATATCTACAATCTAATCAAATCATAAGATCCCGCGAAAAT
GAACGACGCTGATGTTTCGAAGCAGATCCAGCAGATGGTGCGGTTTATCC
GCCAAGAAGCCGAAGAGAAAGCCAACGAGATCTCAGTTTCTGCCGAAGAA
GAATTCGACATAGAGAAGTTGCAGCTGGTGGAAGCAGAGAAGAAGAAGAT
CAGACAAGAGTACGAGCGGAAAGAGAAGCAAGTCGAAATCAGAAAGAAGA
TTGAGTACTCCATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCT
CAGGATGATTTGGTCAGTAATATGATGGAGGCAGCATCAGAGGAGGTTTT
GAATGTGAGTCGAGATCACAATTCATATAAGAAGCTTTTGAAGGGTCTTA
TTGTTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTGTGTTACTGAGATGC
CGCAAAGATGACCATCATTTGGTGGAGTCTGTTTTGGA
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