DN617357

Overview
NameDN617357
Unique NameDN617357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig989 contig Csv1_Contig989:19..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.235e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = -2
Query:  284 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 466
            IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY EVKPAL NMVAAAKLLRTQLASAK
Sbjct:  704 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.892e-25
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = -2
Query:  284 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 466
            IPSTEEIADRINKMLAVL+TNILWVNPDCGLKTRKY EVKPAL NMV+AAKL+RTQLASAK
Sbjct:  705 IPSTEEIADRINKMLAVLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.732e-24
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = -2
Query:  284 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 466
            IPS+EEIADR+NKMLAVLE NILWVNPDCGLKTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct:  705 IPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = -2
Query:  284 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 466
            IP TEE+ADRI KMLAVLE+N+LWVNPDCGLKTRKY EV PALSNMVAAAK LR +LASAK
Sbjct:  705 IPPTEELADRIRKMLAVLESNVLWVNPDCGLKTRKYGEVNPALSNMVAAAKQLRQELASAK 765          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = -2
Query:  290 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 466
            IP+T+E+AD +NK + VL    +WVNPDCGLKTR++ E + AL NMVAAA+ +R ++ +
Sbjct:  715 IPTTDEMADLLNKAMHVLPVRNIWVNPDCGLKTRRWPETEAALINMVAAAQKIRKEITT 773          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_BLOPB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.463e-11
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = -2
Query:  287 PSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASA 463
            P+  ++  RIN++L  +    LW+NPDCGLKTR + E+K +L+NMV+AAKLLR Q  S+
Sbjct:  706 PTQNDLIRRINQLLKYIPEQRLWINPDCGLKTRSWPEIKHSLNNMVSAAKLLRKQFYSS 764          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = -2
Query:  293 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 466
            IPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L N+VAAAK +R +LA
Sbjct:  710 IPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_SACD2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=metE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = -2
Query:  293 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 466
            IP+TE++   I K    L    LW+NPDCGLKTRK+ +V PAL NMV AAK LR ++A
Sbjct:  708 IPATEQVVGLIKKAAENLPLQRLWINPDCGLKTRKWEDVIPALENMVNAAKQLRAEVA 765          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_BURVG (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = -2
Query:  296 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 466
            IP+ E I   + K    +    LWVNPDCGLKTR++ EV PAL+NMVAAAK LR++L
Sbjct:  707 IPTQEHIVGLMRKAAERIPAQRLWVNPDCGLKTRRWAEVLPALTNMVAAAKTLRSEL 763          
BLAST of DN617357 vs. ExPASy Swiss-Prot
Match: METE_DESRM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=metE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  296 IPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 466
            +PS EE+ ++I  ++ VL  + LW+NPDCGLKTRK+ E++ +LSNMV AA+ +R  L
Sbjct:  702 VPSVEELEEKIRNLMLVLPPSKLWINPDCGLKTRKWDEIRWSLSNMVKAAQHIRLGL 758          
The following BLAST results are available for this feature:
BLAST of DN617357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
METE_SOLSC2.235e-2696.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.892e-2591.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH2.732e-2488.525-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR3.339e-2283.615-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH35.343e-1252.545-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOPB3.463e-1150.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA4.523e-1153.455-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SACD25.908e-1155.175-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURVG5.908e-1156.145-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESRM7.716e-1150.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617357 ID=DN617357; Name=DN617357; organism=Citrus sinensis; type=EST; length=467bp
CCCCCCTTTTTTTTTTTTTATTGCACAAACACAGTAAAGGTATTCCATCG
ATTTACGGCCACTGATAGCAAGCCAGGGCCTTTAAAAACAGAAAATACAA
GCAAAGAAAAATAGAAGCCGATTGCTCAAAAGTGCATAATATGCCTACGG
AAAATTTTCATCACATCACGACCCACAGTTATTCGAATAGGTAGGTAATA
AGACAGGAATTTTCTTTCTTTGTTTAAAGTGAAAAAAAAATCAATGGCTC
AGGAAGTATCCCTCCAATCTCTGGAACCACTCACTTGGCACTGGCAAGCT
GGGTGCGGAGTAGCTTGGCAGCAGCAACCATGTTTGAGAGGGCTGGCTTC
ACCTCAGTGTACTTGCGAGTCTTAAGACCACAGTCAGGGTTAACCCACAA
AATGTTGGTTTCTAGCACAGCAAGCATCTTGTTGATTCTGTCAGCAATTT
CTTCAGTTGATGGTATT
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