DN617356

Overview
NameDN617356
Unique NameDN617356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:32..479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617356 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 73/136 (53.68%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   97 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVL 447
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGTSVL
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVL 142          
BLAST of DN617356 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.105e-16
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  178 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTSVL 447
            ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL TS +
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAV 143          
BLAST of DN617356 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  148 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGT 438
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYT 108          
BLAST of DN617356 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 53/128 (41.41%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   58 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGT 438
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYT 113          
BLAST of DN617356 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.398e-11
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  244 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTS 441
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T+
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATA 173          
The following BLAST results are available for this feature:
BLAST of DN617356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA3.101e-2753.68Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.105e-1647.57Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU5.486e-1646.46Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU7.165e-1641.41Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.398e-1152.05High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617356 ID=DN617356; Name=DN617356; organism=Citrus sinensis; type=EST; length=448bp
CATTAACCTAAAAACTCCCAGTTGCTAAATTATTCCTCCGTTGCATAATC
TACAAAAATGGCTGCTTCACTCGCCACTCAATCTATGCTTGGAAGCTCTG
TCGTCGCAGCTCGTGTTACCGGCATCAGGAAATCTGGGGTGTACCAATTT
TCCTCTGTTAAGTACTTACCTGGTACTCTGCAGAGAAATGTTAGCTTATC
AGTGCGCTGCATGGCTAAGAATGAGCAGCAGAAGGATCAATCAACTCAGC
CACCAAAGCTACCGCGTATAAGCACGAAGTTCTCTGACGTGTTTGCGTTC
AGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTT
CGTGGCTGCATTGGCGGTGGAGCTATCCAAGGGTCAGGATGTGTTTGCCC
AGTTATCAGACGGTGGAGTTGCCTGGTTCTTGGGGACCAGTGTTCTGC
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