DN617351

Overview
NameDN617351
Unique NameDN617351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:15..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.028e-75
Identity = 131/146 (89.73%), Postives = 140/146 (95.89%), Query Frame = -1
Query:  189 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 626
            KTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVYK+GK GQESH   TEFDRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSKFGHGRFQTT EKQ+++G++KA
Sbjct:  244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 267.7 bits (683), Expect = 3.421e-71
Identity = 123/143 (86.01%), Postives = 137/143 (95.80%), Query Frame = -1
Query:  198 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGR 626
            KTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVY++GK GQE+H+ +TE+DRTEKDITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S  GHGRFQT+QEK K+YGR
Sbjct:  244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 266.159 bits (679), Expect = 9.953e-71
Identity = 122/144 (84.72%), Postives = 136/144 (94.44%), Query Frame = -1
Query:  195 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRM 626
            KTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKK+Y+LGK G E+HT +TE+DRTEKD+TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 9.999e-55
Identity = 99/151 (65.56%), Postives = 120/151 (79.47%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQES------HTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y++G G          +   TE+D T+K ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK GHGRFQT  +K  + G +K
Sbjct:  243 KTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.306e-54
Identity = 97/148 (65.54%), Postives = 120/148 (81.08%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG---GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y+LGK     +    G T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSKFGHGRFQT  EK+ + G++K
Sbjct:  243 KTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.359e-53
Identity = 94/148 (63.51%), Postives = 121/148 (81.76%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGG---QESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTH+GLRKVACIGAWHP+RV+FTVARAGQ G+HHRT +N K+Y++GK     +  + G TEFD T+K ITPMGGFP YGIV  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I +K+IDTSSK GHGRFQTT EK+ + G++K
Sbjct:  243 KTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.359e-53
Identity = 98/145 (67.59%), Postives = 116/145 (80.00%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY++GKGG E +   TEFDRT+K ITPMGGF HYG V +D++M+KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  242 KTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.596e-52
Identity = 97/151 (64.24%), Postives = 121/151 (80.13%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG------GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPARV+FTVARAGQ GYHHRTE+NKK+YK+G+G          +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  243 KTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.085e-52
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = -1
Query:  189 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG----GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 626
            KTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y++G+     G++  TG TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I +KFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  244 KTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of DN617351 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 4.645e-52
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = -1
Query:  192 KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG------GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 626
            KTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+G          +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  243 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
The following BLAST results are available for this feature:
BLAST of DN617351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_ORYSJ1.028e-7589.7360S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH3.421e-7186.0160S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH9.953e-7184.7260S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME9.999e-5565.5660S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA1.306e-5465.5460S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL9.359e-5363.5160S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_ASHGO9.359e-5367.5960S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_MOUSE1.596e-5264.2460S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_DICDI2.085e-5264.0060S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_RAT4.645e-5263.5860S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617351 ID=DN617351; Name=DN617351; organism=Citrus sinensis; type=EST; length=626bp
TTTAAATTTAAAAATATTCAATCAGAATAAAGCACGACCATTCTCTTAAA
AAATAAAATAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAAAA
ACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTAAC
TATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATGCG
TCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCCAA
ACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTAAA
CGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTCTT
AGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAATAC
CATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGTCA
AATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTGTA
AACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGCTC
TGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAGCC
ACCTTACGCAGACCTCTGTGAGTCTT
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